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[191762_at] protein-tyrosine phosphatase

Description F55F8.7 /REP_DB=WormBase Gene ID /WP=CE11200 /TR=P91345 /GB=AAB37811.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 88      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 4.9
(-2.7)
A 		2.2
(-3)
A 		15.2
(-1.5)
A 		53.7
(3)
A 		52
B 4.1
(-2.6)
A 		16
(3)
A 		3.7
(-2.8)
A 		3.2
(-3)
A 		13
C 6.5
(-2)
A 		22.3
(3)
A 		3.3
(-3)
A 		11.7
(-0.3)
A 		19
avr 5.2
(-3) 		13.5
(-0.2) 		7.4
(-2.3) 		22.9
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 6.9
(-2.5)
A 		3.2
(-3)
A 		6.6
(-2.5)
A 		5.1
(-2.7)
A 		40.7
(2.3)
A 		45.3
(3)
A 		42
B 2
(-3)
A 		3.3
(-2.8)
A 		9.6
(-2)
A 		11.2
(-1.8)
A 		29.6
(0.6)
A 		47.9
(3)
A 		46
C 5.7
(-2.9)
A 		4.6
(-3)
A 		4.9
(-3)
A 		6.3
(-2.8)
A 		22.9
(-1.2)
A 		66
(3)
A 		61
avr 4.9
(-2.9) 		3.7
(-3) 		7
(-2.6) 		7.5
(-2.5) 		31.1
(0.3) 		53.1
(3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.8
(-1.9)
A 		0.5
(-3)
A 		4
(-0.2)
A 		7.9
(3)
A 		7
B 1.3
(-1.9)
A 		3.9
(3)
A 		0.9
(-2.6)
A 		0.7
(-3)
A 		3
C 2.1
(-1.9)
A 		6.4
(3)
A 		1.1
(-3)
A 		2
(-2)
A 		5
avr 1.7
(-3) 		3.6
(3) 		2
(-2.1) 		3.5
(2.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.3
(-2.9)
A 		1.1
(-3)
A 		1.4
(-2.8)
A 		1.3
(-2.9)
A 		12.3
(3)
A 		11
(2.3)
A 		11
B 0.7
(-3)
A 		1.1
(-2.9)
A 		2.3
(-2.4)
A 		3
(-2.2)
A 		12
(0.9)
A 		17.9
(3)
A 		17
C 2.1
(-2.7)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		1.3
(-3)
A 		7.4
(-1.2)
A 		22.1
(3)
A 		21
avr 1.4
(-2.9) 		1.2
(-3) 		1.6
(-2.8) 		1.9
(-2.7) 		10.6
(0.6) 		17
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191762_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.563
Sequence Type Exemplar sequence
Representative Public ID F55F8.7 NCBI
Target Description F55F8.7 /REP_DB=WormBase Gene ID /WP=CE11200 /TR=P91345 /GB=AAB37811.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059256(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059256 NCBI Caenorhabditis elegans F55F8.7 (F55F8.7) mRNA, complete cds. 11/11 A 
F55F8.7 ENSEMBL cdna:known chromosome:CEL140:I:5659135:5661215:-1 gene:F55F8.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024471 6/11 Cross Hyb Matching Probes None
GENEFINDER00000024479 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5659134-5661215(-) 96.08 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl F55F8.7
Entrez Gene 172228 Entrez gene
SwissProt P91345 EMBL-EBI
WormBase CE11200 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37811 Hypothetical protein F55F8.7 [Caenorhabditis elegans] ref|NP_491657.1| F55F8.7 [Caenorhabditis elegans] 0.0
blast CAB02988 Hypothetical protein F25H5.7 [Caenorhabditis elegans] ref|NP_492454.1| F25H5.7 [Caenorhabditis elegans] 0.0
blast CAE75077 Hypothetical protein CBG22995 [Caenorhabditis briggsae] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.1E-99
Sequence
Target Sequence 
>C. ELEGANS:191762_AT
gaattctttgactgtaatcaacacggaggatgccacttctgaaccattgtacatgaatca
tgtgcaagttccatggtggccagatcaattggctccggaggatgctcgtccgatgatcga
attgtataaatgggtgaagaaggtgaatccaaaagaaaagccaatttgtgttcattgtag
tgctggtgttggaagaactgccacttttgttggtatcgactacgcaactatccgcataat
ggaaaatccgaatattgagatgttggatattgtccgtgagatgcgtgcaatgcgtttcca
agcagtccaatctcatatgcaattcctattcctttatgttgttctgatggagtactttat
tggggaaggagtcgttgaacgtaccggacaaattgacacttttatgactcaatacaagaa
acatgcacagaaaaagttggcaaaacaatatttgcaaagaaaacagaaagttgttgtgaa
agatgcatttccctttaatggtagttttcaaataatattttttgaaccaccgccaattga
acgaggtggtggcctaggaaccgacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCTTTGACTGTAATCAACACG 439 323 972 Antisense
TCAACACGGAGGATGCCACTTCTGA 354 629 989 Antisense
AAAGCCAATTTGTGTTCATTGTAGT 384 125 1128 Antisense
AATGCGTTTCCAAGCAGTCCAATCT 380 167 1260 Antisense
CCAAGCAGTCCAATCTCATATGCAA 345 277 1269 Antisense
TTGAACGTACCGGACAAATTGACAC 233 685 1346 Antisense
GATGCATTTCCCTTTAATGGTAGTT 667 411 1453 Antisense
TAATATTTTTTGAACCACCGCCAAT 510 635 1484 Antisense
TGAACCACCGCCAATTGAACGAGGT 535 573 1494 Antisense
GAACGAGGTGGTGGCCTAGGAACCG 100 347 1510 Antisense
AGGTGGTGGCCTAGGAACCGACAAG 597 1 1515 Antisense
Sequence Source Affymetrix Proprietary Database