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[191758_at] LDL receptor related protein

Description R11G1.1 /REP_DB=WormBase Gene ID /WP=CE04832 /TR=Q21948 /GB=AAA82321.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=LDL receptor related protein
Cluster 6grp_total > 92      4grp_total > 59      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 25.6
(-1.8)
A 		6.2
(-3)
A 		101.3
(3)
A 		10.2
(-2.7)
A 		95
B 28.8
(-0.8)
A 		69.7
(3)
A 		65.9
(2.6)
A 		4.6
(-3)
A 		65
C 80.8
(3)
A 		80.2
(3)
A 		53.7
(0.8)
A 		7.4
(-3)
A 		73
avr 45.1
(0.4) 		52
(1) 		73.6
(3) 		7.4
(-3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 27.9
(-3)
A 		75.4
(3)
A 		47.6
(-0.5)
A 		61.6
(1.3)
A 		60.8
(1.2)
A 		43.1
(-1.1)
A 		48
B 61.5
(2.9)
A 		30.1
(-0.4)
A 		44.9
(1.1)
A 		12.6
(-2.3)
A 		62.9
(3)
A 		5.5
(-3)
A 		57
C 65
(0)
A 		34
(-3)
A 		59.8
(-0.5)
A 		95.7
(3)
A 		51
(-1.3)
A 		36.5
(-2.8)
A 		62
avr 51.5
(1.7) 		46.5
(0.6) 		50.8
(1.5) 		56.6
(2.7) 		58.2
(3) 		28.4
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 9.3
(-1.1)
A 		1.3
(-3)
A 		26.5
(3)
A 		1.5
(-3)
A 		25
B 9.2
(0)
A 		17.2
(3)
A 		15.3
(2.3)
A 		1
(-3)
A 		16
C 26.7
(3)
A 		23.1
(2.1)
A 		18.7
(1.1)
A 		1.3
(-3)
A 		25
avr 15.1
(1.4) 		13.9
(1) 		20.2
(3) 		1.3
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 5.1
(-3)
A 		26.8
(3)
A 		10.4
(-1.5)
A 		15.6
(-0.1)
A 		18.4
(0.7)
A 		10.5
(-1.5)
A 		22
B 21.4
(1.9)
A 		10
(-1)
A 		10.9
(-0.8)
A 		3.3
(-2.7)
A 		25.6
(3)
A 		2.1
(-3)
A 		24
C 24.1
(3)
A 		10.4
(-3)
A 		15.2
(-0.9)
A 		19.2
(0.9)
A 		16.5
(-0.3)
A 		12.2
(-2.2)
A 		14
avr 16.9
(1.3) 		15.7
(0.7) 		12.2
(-1) 		12.7
(-0.8) 		20.2
(3) 		8.3
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191758_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18569
Sequence Type Exemplar sequence
Representative Public ID R11G1.1 NCBI
Target Description R11G1.1 /REP_DB=WormBase Gene ID /WP=CE04832 /TR=Q21948 /GB=AAA82321.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=LDL receptor related protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076228(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076228 NCBI Caenorhabditis elegans R11G1.1 (R11G1.1) mRNA, complete cds. 11/11 A 
SNAP00000032657 ENSEMBL cdna:SNAP chromosome:CEL140:X:3661554:3666789:1 11/11 None
GENEFINDER00000032666 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3661638:3666789:1 11/11 None
R11G1.1 ENSEMBL cdna:known chromosome:CEL140:X:3659479:3666866:1 gene:R11G1.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3659479-3663951(+) 100.0 100.0
Public Domain and Genome References
Gene Title LDL receptor related protein
Ensembl R11G1.1
Entrez Gene 187815 Entrez gene
SwissProt Q21948 EMBL-EBI
WormBase CE31051 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82321 Hypothetical protein R11G1.1 [Caenorhabditis elegans] ref|NP_508629.2| R11G1.1 [Caenorhabditis elegans] 0.0
blast CAE68462 Hypothetical protein CBG14255 [Caenorhabditis briggsae] 0.0
blast T16721 hypothetical protein R11G1.5 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.4E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508629.2 1 813-835
R11G1.1 1 813-835
GENEFINDER00000032666 1 313-335
Sequence
Target Sequence 
>C. ELEGANS:191758_AT
aaggcctccggacatgagtcaagttatagaagaagttaacgagaatcccactgcatccat
tcacaattcagagtctttaccgaaagttagtagccttgcaaagatatcaacgcacacagc
gaattcggagcctccaacacccgtaggcgttatcgaaactcctattcttgagaagaattc
aagctccgtgtctcttgtctcggcaaatgacaacgcacctcaacttcccagtttaccact
gccgcttcctgtaccaatcacgacgagcgcatcaacaaccaatttagaagagacgacggg
aaaggagaatgggcgagaaggaggaggagggagtcatgcatcagctcaggaacaacaagt
gccggaaacggaaagaccagcttcgtcgcattcagttggtgtgcagccaaccatttggga
gacgtatcgagtacttggacaacaatactcgaaatctgatttgactgaaaggaaagccag
tgtggactcactcgaacaaatgttcgaagcaaggctcgctgaaacgtcaagaaccaccaa
gaccattccgactgttcgaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGCCTCCGGACATGAGTCAAGTT 694 159 2748 Antisense
CCCACTGCATCCATTCACAATTCAG 65 259 2794 Antisense
ACGCACACAGCGAATTCGGAGCCTC 512 91 2857 Antisense
TCCAACACCCGTAGGCGTTATCGAA 636 587 2880 Antisense
GAAGAATTCAAGCTCCGTGTCTCTT 367 341 2919 Antisense
CGTGTCTCTTGTCTCGGCAAATGAC 156 245 2934 Antisense
GCTTCCTGTACCAATCACGACGAGC 654 303 2991 Antisense
GACGAGCGCATCAACAACCAATTTA 312 379 3009 Antisense
GAGGGAGTCATGCATCAGCTCAGGA 61 403 3074 Antisense
CCAGCTTCGTCGCATTCAGTTGGTG 331 271 3124 Antisense
CAAGACCATTCCGACTGTTCGAACG 269 185 3285 Antisense
Sequence Source Affymetrix Proprietary Database