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[191756_s_at] sodium/phosphate transporter

Description R10D12.1 /REP_DB=WormBase Gene ID /WP=CE12672 /TR=Q9XVK0 /GB=CAB03245.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 13      4grp_high_8_8 > 22      6grp_highest_nonorm > 83      6grp_total > 94      4grp_total > 16      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1121
1 2 3 4 range
A 402.2
(-3)
P 		487.4
(-2.5)
P 		726.9
(-1)
P 		1366.5
(3)
P 		964
B 281.1
(-3)
P 		688.7
(-0.7)
P 		782.1
(-0.2)
P 		1350.5
(3)
P 		1069
C 245.3
(-3)
P 		709.4
(-0.3)
P 		757.5
(-0)
P 		1275.6
(3)
P 		1030
avr 309.5
(-3) 		628.5
(-1.1) 		755.5
(-0.4) 		1330.9
(3) 		1021

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 442
1 2 3 4 5 6 range
A 361.9
(-3)
P 		371.9
(-2.8)
P 		391.1
(-2.5)
P 		450.5
(-1.4)
P 		692.7
(3)
P 		564.4
(0.7)
P 		331
B 352.9
(-2.1)
P 		455.3
(-0.6)
P 		286.5
(-3)
P 		447.1
(-0.8)
P 		715.9
(3)
P 		648.5
(2.1)
P 		429
C 310.1
(-2.5)
P 		440.9
(-0.6)
P 		274.4
(-3)
P 		482.8
(-0)
P 		691.8
(3)
P 		590.2
(1.5)
P 		417
avr 341.6
(-2.6) 		422.7
(-1.3) 		317.3
(-3) 		460.1
(-0.8) 		700.1
(3) 		601
(1.4) 		383
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 146.4
(-0.4)
P 		105.8
(-3)
P 		190
(2.4)
P 		200
(3)
P 		94
B 89.7
(-3)
P 		170.1
(-0.6)
P 		181.2
(-0.2)
P 		287.8
(3)
P 		198
C 81.2
(-3)
P 		204
(1)
P 		264
(3)
P 		215.1
(1.4)
P 		183
avr 105.8
(-3) 		160
(-0.5) 		211.7
(1.9) 		234.3
(3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 66.7
(-3)
P 		132.3
(-0.2)
P 		85.2
(-2.2)
P 		114.3
(-1)
P 		209
(3)
P 		137.4
(-0)
P 		142
B 122.8
(-1.6)
P 		151.6
(-0.8)
P 		69.6
(-3)
P 		118.4
(-1.7)
P 		290.9
(3)
P 		241.8
(1.7)
P 		221
C 114.9
(-1.2)
P 		134.5
(-0.5)
P 		69.8
(-3)
P 		97.1
(-1.9)
P 		223.8
(3)
P 		197.6
(2)
P 		154
avr 101.5
(-2) 		139.5
(-0.7) 		74.9
(-3) 		109.9
(-1.7) 		241.2
(3) 		192.3
(1.2) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191756_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14437
Sequence Type Exemplar sequence
Representative Public ID R10D12.1 NCBI
Target Description R10D12.1 /REP_DB=WormBase Gene ID /WP=CE12672 /TR=Q9XVK0 /GB=CAB03245.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074055(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074055 NCBI Caenorhabditis elegans R10D12.1 (R10D12.1) mRNA, complete cds. 11/11 None
SNAP00000021048 ENSEMBL cdna:SNAP chromosome:CEL140:V:13935363:13937224:-1 11/11 None
GENEFINDER00000021068 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13935363:13937224:-1 11/11 None
R10D12.1 ENSEMBL cdna:known chromosome:CEL140:V:13935170:13937234:-1 gene:R10D12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13935362-13937224(-) 100.0 100.0
Public Domain and Genome References
Gene Title sodium/phosphate transporter
Ensembl R10D12.1
Entrez Gene 179888 Entrez gene
SwissProt Q9XVK0 EMBL-EBI
WormBase CE12672 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03245 Hypothetical protein R10D12.1 [Caenorhabditis elegans] ref|NP_506456.1| R10D12.1 [Caenorhabditis elegans] 0.0
blast CAE66193 Hypothetical protein CBG11431 [Caenorhabditis briggsae] 0.0
blast CAE61620 Hypothetical protein CBG05546 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506456.1 12 35-57,89-108,123-145,152-171,176-198,210-229,276-298,311-330,345-364,369-391,406-425,438-460
R10D12.1 12 35-57,89-108,123-145,152-171,176-198,210-229,276-298,311-330,345-364,369-391,406-425,438-460
SNAP00000021048 12 35-57,89-108,123-145,152-171,176-198,210-229,276-298,311-330,345-364,369-391,406-425,438-460
GENEFINDER00000021068 12 35-57,89-108,123-145,152-171,176-198,210-229,276-298,311-330,345-364,369-391,406-425,438-460
Sequence
Target Sequence 
>C. ELEGANS:191756_S_AT
tcaactgattcacatttattccccagtattccttcatgatgtcggtggttattcattcga
gaaaaccggattcgccgctgcagttccagttctgttccagttcttcgtcaaaatgttcgc
aggacattcgagtgacaaggtacatggtatttctgaaaccacaaaacttcgaatctataa
cacaattgctctcggagccagtgcaatctttttggtgtctcttggatttgtgaagcaagg
acaaggagtattgggattggtattgatgactttggcaactggaatgtttggattcaatgg
aggaggtttcagtaagtgtgctgctcttgtctctcgccaatacaatcactttgtaatggc
aattcaacaaattcttgtctgcttgtcaatgatcgtatgtcccatcatcgtttccacaat
tctacaacatggaactacagccgaatggagaatcgtattctttgtgcatgctgcaattct
gcttatttgtaatgccatcttctgctggctggcaactgcaaaacctgctccatggactga
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACTGATTCACATTTATTCCCCA 77 631 873 Antisense
CCCCAGTATTCCTTCATGATGTCGG 558 261 893 Antisense
TCGAGAAAACCGGATTCGCCGCTGC 684 601 929 Antisense
TTGCTCTCGGAGCCAGTGCAATCTT 242 701 1058 Antisense
GTGCAATCTTTTTGGTGTCTCTTGG 142 481 1073 Antisense
TCAGTAAGTGTGCTGCTCTTGTCTC 418 623 1181 Antisense
TGTCTCTCGCCAATACAATCACTTT 53 559 1200 Antisense
TGATCGTATGTCCCATCATCGTTTC 322 565 1262 Antisense
GAATCGTATTCTTTGTGCATGCTGC 565 329 1322 Antisense
TCTTCTGCTGGCTGGCAACTGCAAA 576 617 1370 Antisense
TGCAAAACCTGCTCCATGGACTGAT 370 575 1389 Antisense
Sequence Source Affymetrix Proprietary Database