[Home] | [Total List]

[191755_at] 7TM chemoreceptor, srd family

Description K02A2.2 /REP_DB=WormBase Gene ID /WP=CE21013 /GEN=srd-55 /TR=SW:Q09572 /GB=AAC46702.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 29      4grp_total > 09      6grp_cgc > 99      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 15.3
(-2.7)
A 		8.6
(-3)
A 		35.4
(-1.8)
A 		143.4
(3)
P 		135
B 9
(-2.6)
A 		33.8
(-0.5)
A 		3.8
(-3)
A 		76.4
(3)
P 		73
C 7.8
(-3)
A 		14.8
(-2.6)
A 		21.1
(-2.2)
A 		105.2
(3)
P 		97
avr 10.7
(-3) 		19.1
(-2.5) 		20.1
(-2.4) 		108.3
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 29.3
(-0.1)
A 		34.1
(0.5)
A 		54.7
(3)
A 		5.5
(-3)
A 		43.4
(1.6)
A 		39.9
(1.2)
A 		49
B 23.9
(3)
A 		8
(-1.4)
A 		2.2
(-3)
A 		7.7
(-1.5)
A 		21.8
(2.4)
A 		8.8
(-1.2)
A 		22
C 26.6
(0.2)
A 		45.6
(3)
A 		30.1
(0.8)
A 		4.2
(-3)
A 		38.1
(1.9)
A 		6
(-2.7)
A 		41
avr 26.6
(1.4) 		29.2
(1.9) 		29
(1.9) 		5.8
(-3) 		34.4
(3) 		18.2
(-0.4) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 5.6
(-1.8)
A 		1.9
(-3)
A 		9.3
(-0.7)
A 		21
(3)
P 		19
B 2.9
(-2.2)
A 		8.4
(-0.1)
A 		0.9
(-3)
A 		16.3
(3)
P 		15
C 2.6
(-3)
A 		4.2
(-2.4)
A 		7.3
(-1.1)
A 		17.7
(3)
P 		15
avr 3.7
(-3) 		4.8
(-2.5) 		5.8
(-2.1) 		18.3
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.4
(-0.9)
A 		12.1
(2.5)
A 		11.9
(2.4)
A 		1.4
(-3)
A 		13.1
(3)
A 		9.7
(1.3)
A 		12
B 8.3
(2.6)
A 		2.7
(-1.4)
A 		0.5
(-3)
A 		2
(-1.9)
A 		8.9
(3)
A 		3.3
(-1)
A 		8
C 9.9
(1.2)
A 		13.9
(3)
A 		7.7
(0.1)
A 		0.9
(-3)
A 		12.3
(2.3)
A 		2
(-2.5)
A 		13
avr 7.9
(0.9) 		9.6
(1.9) 		6.7
(0.2) 		1.4
(-3) 		11.4
(3) 		5
(-0.8) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191755_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4716
Sequence Type Exemplar sequence
Representative Public ID K02A2.2 NCBI
Target Description K02A2.2 /REP_DB=WormBase Gene ID /WP=CE21013 /GEN=srd-55 /TR=SW:Q09572 /GB=AAC46702.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063152(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063152 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-55) (srd-55) mRNA, complete cds. 11/11 None
GENEFINDER00000023854 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7408740:7410677:1 11/11 None
K02A2.2 ENSEMBL cdna:known chromosome:CEL140:II:7408422:7410677:1 gene:K02A2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7408418-7410674(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-55
Ensembl K02A2.2
Entrez Gene 191817 Entrez gene
SwissProt Q09572 EMBL-EBI
WormBase CE21013 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46702 Serpentine receptor, class d (delta) protein 55 [Caenorhabditis elegans] ref|NP_495553.1| Serpentine Receptor, class D (delta) family member (srd-55) [Caenorhabditis elegans] sp|Q09572|SRD55_CAEEL Serpentine receptor class delta-55 (Protein srd-55) 1.0E-169
blast AAC46702 Serpentine receptor, class d (delta) protein 55 [Caenorhabditis elegans] ref|NP_495553.1| Serpentine Receptor, class D (delta) family member (srd-55) [Caenorhabditis elegans] sp|Q09572|SRD55_CAEEL Serpentine receptor class delta-55 (Protein srd-55) 1.0E-141
blast CAE67613 Hypothetical protein CBG13160 [Caenorhabditis briggsae] 1.0E-129
blast CAE67613 Hypothetical protein CBG13160 [Caenorhabditis briggsae] 1.0E-109
blast CAE67536 Hypothetical protein CBG13059 [Caenorhabditis briggsae] 3.0E-79
blast CAE67536 Hypothetical protein CBG13059 [Caenorhabditis briggsae] 1.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495553.1 7 15-36,48-67,98-120,133-155,195-217,238-260,275-297
K02A2.2 7 15-36,48-67,98-120,133-155,195-217,238-260,275-297
GENEFINDER00000023854 5 49-71,84-106,146-168,189-211,226-248
Sequence
Target Sequence 
>C. ELEGANS:191755_AT
tatccctgacgtatattccttcatcaataactattattcttccattcacatcttcttggg
attttgaaaaagttcgttcactgacttacattgagcatccaaaatacgatctttcaatct
acgaaccatttgttggattccacaacatcgcatcatttcagtttactttagctacactcc
ttctagtaatcggagcttacgctatccctgcgatttcaggatttctaacttcaagagtta
ttcatttgatcaacgataacagaggcatgtcgttgaagaccaaggagcaatcaaaaacat
tggcttacggacttgcgtgccaaacatttttacccgttatttgttatattccagtagcaa
gttgttatattttttctcaaatgaccagtgtcgagctgcttttgaatgagcatcttcttg
gaattttgatctgctttccatcattcgttgacccatttatatcgttttattttattgtac
catatcggcaagctctattgggattatttaagtgccgaaaaacaaaacctttaaatatcg
ttatcacagttcgtcatctatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCCCTGACGTATATTCCTTCATC 304 657 422 Antisense
TTCTTCCATTCACATCTTCTTGGGA 328 689 458 Antisense
GATTCCACAACATCGCATCATTTCA 396 433 557 Antisense
TTACTTTAGCTACACTCCTTCTAGT 431 683 584 Antisense
AGTAATCGGAGCTTACGCTATCCCT 525 61 606 Antisense
ACATTGGCTTACGGACTTGCGTGCC 20 105 718 Antisense
TTGCGTGCCAAACATTTTTACCCGT 210 611 734 Antisense
ATGACCAGTGTCGAGCTGCTTTTGA 149 45 802 Antisense
TTTCCATCATTCGTTGACCCATTTA 257 669 856 Antisense
TGTACCATATCGGCAAGCTCTATTG 471 559 897 Antisense
TCGTTATCACAGTTCGTCATCTATC 119 605 959 Antisense
Sequence Source Affymetrix Proprietary Database