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[191754_at] DPY-30 protein

Description ZK863.6 /REP_DB=WormBase Gene ID /WP=CE15445 /GEN=dpy-30 /TR=SW:Q10661 /GB=CAB01452.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=DPY-30 protein
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 40      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 37      6grp_total > 50      4grp_total > 58      6grp_cgc > 93      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2466
1 2 3 4 range
A 3899.2
(-2.1)
P 		5054.1
(0.7)
P 		6003.5
(3)
P 		3537.1
(-3)
P 		2466
B 4249.7
(-1.8)
P 		5798.9
(3)
P 		5604.2
(2.4)
P 		3872.1
(-3)
P 		1927
C 4264.7
(-1.3)
P 		5774.2
(3)
P 		5028.8
(0.9)
P 		3646.1
(-3)
P 		2128
avr 4137.9
(-1.5) 		5542.4
(3) 		5545.5
(3) 		3685.1
(-3) 		1860

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2168
1 2 3 4 5 6 range
A 4924.5
(1.4)
P 		4437.6
(-0.5)
P 		5110.6
(2.1)
P 		5333.9
(3)
P 		3787.5
(-3)
P 		4361.8
(-0.8)
P 		1546
B 4932.5
(-0)
P 		3922.7
(-3)
P 		5955.7
(3)
P 		4713.8
(-0.7)
P 		4119.2
(-2.4)
P 		4083.2
(-2.5)
P 		2033
C 4907.8
(3)
P 		4364.1
(-3)
P 		4793.9
(1.7)
P 		4457.6
(-2)
P 		4390.8
(-2.7)
P 		4708.4
(0.8)
P 		544
avr 4921.6
(1.2) 		4241.5
(-2.3) 		5286.7
(3) 		4835.1
(0.7) 		4099.2
(-3) 		4384.5
(-1.6) 		1188
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1235
1 2 3 4 range
A 1419.7
(2.1)
P 		1097.1
(0.3)
P 		1569.4
(3)
P 		517.8
(-3)
P 		1052
B 1355.2
(2.2)
P 		1432.2
(3)
P 		1298.6
(1.7)
P 		825.1
(-3)
P 		607
C 1411.7
(1.2)
P 		1660.1
(2.5)
P 		1752.7
(3)
P 		614.8
(-3)
P 		1138
avr 1395.5
(2) 		1396.5
(2) 		1540.2
(3) 		652.6
(-3) 		888

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 923
1 2 3 4 5 6 range
A 907.8
(-3)
P 		1578.2
(3)
P 		1113
(-1.2)
P 		1352.8
(1)
P 		1142.9
(-0.9)
P 		1062
(-1.6)
P 		670
B 1716.3
(3)
P 		1305.7
(-2.3)
P 		1446.2
(-0.5)
P 		1248.5
(-3)
P 		1673.6
(2.5)
P 		1522.6
(0.5)
P 		468
C 1819.1
(3)
P 		1331.6
(-0.2)
P 		1220.1
(-0.9)
P 		896.4
(-3)
P 		1420.8
(0.4)
P 		1576.2
(1.4)
P 		923
avr 1481.1
(3) 		1405.2
(1.6) 		1259.8
(-1.2) 		1165.9
(-3) 		1412.4
(1.7) 		1386.9
(1.2) 		315
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191754_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13783
Sequence Type Exemplar sequence
Representative Public ID ZK863.6 NCBI
Target Description ZK863.6 /REP_DB=WormBase Gene ID /WP=CE15445 /GEN=dpy-30 /TR=SW:Q10661 /GB=CAB01452.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=DPY-30 protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073657 NCBI Caenorhabditis elegans DumPY : shorter than wild-type family member (dpy-30) (dpy-30) mRNA, complete cds. 11/11 None
SNAP00000039744 ENSEMBL cdna:SNAP chromosome:CEL140:V:12194247:12194576:1 10/11 None
GENEFINDER00000039750 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12194126:12194576:1 11/11 None
ZK863.6.2 ENSEMBL cdna:known chromosome:CEL140:V:12194100:12194768:1 gene:ZK863.6 11/11 None
ZK863.6.3 ENSEMBL cdna:known chromosome:CEL140:V:12194105:12194973:1 gene:ZK863.6 11/11 None
ZK863.6.1 ENSEMBL cdna:known chromosome:CEL140:V:12194107:12194799:1 gene:ZK863.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12194125-12194576(+) 100.0 100.0
Public Domain and Genome References
Gene Title DPY-30 protein
Gene Symbol dpy-30
Ensembl ZK863.6
Entrez Gene 179671 Entrez gene
SwissProt Q10661 EMBL-EBI
WormBase CE15445 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from direct assay QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01452 Hypothetical protein ZK863.6 [Caenorhabditis elegans] ref|NP_506058.1| DumPY : shorter than wild-type family member (dpy-30) [Caenorhabditis elegans] sp|Q10661|DPY30_CAEEL Dosage compensation protein dpy-30 (Dumpy-30 protein) gb|AAA92286.1| nuclear protein essential for dosage compensation 2.0E-51
blast CAB01452 Hypothetical protein ZK863.6 [Caenorhabditis elegans] ref|NP_506058.1| DumPY : shorter than wild-type family member (dpy-30) [Caenorhabditis elegans] sp|Q10661|DPY30_CAEEL Dosage compensation protein dpy-30 (Dumpy-30 protein) gb|AAA92286.1| nuclear protein essential for dosage compensation 6.0E-44
blast CAE75413 Hypothetical protein CBG23403 [Caenorhabditis briggsae] 1.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR007858 EMBL-EBI Dpy-30 5.8E-21
Pfam IPR007858 EMBL-EBI Dpy-30 5.8E-21
Sequence
Target Sequence 
>C. ELEGANS:191754_AT
tctgccgaggttgctaccgagaagatggacactgctgaagctccagctgctgccccagcc
gcatctgcagccgctccagcggaagcagagagcaacgagaatacgacagttccatcaaac
gtcttgtctgccaatggaggacaacagactggtaatcaatcggcaccgcgcaacacaagt
actgttccaactcgtcaatatctcgactcaactgtcgtaccaattcttctgcaaggactc
ggtgctcttgctaaggatcgtccagaaaatccaatcgaattcctggctaacttcctgttg
cgcgagaaagacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGCCGAGGTTGCTACCGAGAAGA 470 607 31 Antisense
TTCCATCAAACGTCTTGTCTGCCAA 304 701 140 Antisense
AGACTGGTAATCAATCGGCACCGCG 103 71 176 Antisense
CACCGCGCAACACAAGTACTGTTCC 581 199 194 Antisense
TACTGTTCCAACTCGTCAATATCTC 498 647 210 Antisense
ATATCTCGACTCAACTGTCGTACCA 52 21 228 Antisense
CTGTCGTACCAATTCTTCTGCAAGG 475 239 242 Antisense
ATTCTTCTGCAAGGACTCGGTGCTC 616 9 253 Antisense
ACTCGGTGCTCTTGCTAAGGATCGT 641 99 267 Antisense
ATCGAATTCCTGGCTAACTTCCTGT 209 37 304 Antisense
AACTTCCTGTTGCGCGAGAAAGACC 705 137 319 Antisense
Sequence Source Affymetrix Proprietary Database