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[191749_at] C4-type zinc finger protein

Description C03G6.12 /REP_DB=WormBase Gene ID /WP=CE07886 /TR=O01449 /GB=AAB52312.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=C4-type zinc finger protein
Cluster 6grp_total > 80      4grp_total > 13      6grp_cgc > 85      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 10.1
(-0.1)
A 		4.7
(-3)
A 		7.6
(-1.4)
A 		15.9
(3)
A 		11
B 6.6
(1.9)
A 		6.9
(2.4)
A 		4
(-3)
A 		7.2
(3)
A 		3
C 9.5
(0.7)
A 		6.6
(-1.6)
A 		4.8
(-3)
A 		12.5
(3)
A 		8
avr 8.7
(-0) 		6.1
(-2.4) 		5.5
(-3) 		11.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 9
(0.3)
A 		5.8
(-1.5)
A 		11.2
(1.6)
A 		8.6
(0.1)
A 		13.6
(3)
A 		3.3
(-3)
A 		10
B 6.4
(-3)
A 		11.7
(-1.9)
A 		10.5
(-2.1)
A 		35.2
(3)
A 		19.1
(-0.4)
A 		7.7
(-2.7)
A 		29
C 5.9
(-3)
A 		11.5
(-2.4)
A 		9.8
(-2.6)
A 		62.7
(3)
A 		6
(-3)
A 		6.7
(-2.9)
A 		57
avr 7.1
(-2.8) 		9.7
(-2.2) 		10.5
(-2.1) 		35.5
(3) 		12.9
(-1.6) 		5.9
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.7
(3)
A 		1
(-3)
A 		2
(-0.8)
A 		2.3
(-0.1)
A 		3
B 2.1
(3)
A 		1.7
(1)
A 		0.9
(-3)
A 		1.5
(-0)
A 		1
C 3.2
(3)
A 		1.9
(-2.2)
A 		1.7
(-3)
A 		2.1
(-1.4)
A 		2
avr 3
(3) 		1.5
(-3) 		1.5
(-3) 		2
(-1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.7
(-1.4)
A 		2.1
(-0.6)
A 		2.4
(-0.1)
A 		2.2
(-0.5)
A 		4.1
(3)
A 		0.8
(-3)
A 		3
B 2.2
(-3)
A 		3.9
(-1.6)
A 		2.6
(-2.7)
A 		9.3
(3)
A 		7.7
(1.6)
A 		2.9
(-2.4)
A 		7
C 2.2
(-2.9)
A 		3.5
(-2.2)
A 		2.5
(-2.7)
A 		12.6
(3)
A 		2
(-3)
A 		2.2
(-2.9)
A 		11
avr 2
(-3) 		3.2
(-1.8) 		2.5
(-2.5) 		8
(3) 		4.6
(-0.4) 		2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191749_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12189
Sequence Type Exemplar sequence
Representative Public ID C03G6.12 NCBI
Target Description C03G6.12 /REP_DB=WormBase Gene ID /WP=CE07886 /TR=O01449 /GB=AAB52312.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=C4-type zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072473(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072473 NCBI Caenorhabditis elegans C03G6.12 (C03G6.12) mRNA, complete cds. 11/11 None
SNAP00000031549 ENSEMBL cdna:SNAP chromosome:CEL140:V:7350870:7352020:-1 11/11 None
GENEFINDER00000031566 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7350870:7354697:-1 11/11 None
C03G6.12 ENSEMBL cdna:known chromosome:CEL140:V:7350870:7352660:-1 gene:C03G6.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7350870-7352661(-) 100.0 100.0
Public Domain and Genome References
Gene Title C4-type zinc finger protein
Gene Symbol nhr-149
Ensembl C03G6.12
Entrez Gene 182174 Entrez gene
SwissProt O01449 EMBL-EBI
WormBase CE07886 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
4879 ligand-dependent nuclear receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52312 Hypothetical protein C03G6.12 [Caenorhabditis elegans] ref|NP_504874.1| C03G6.12 [Caenorhabditis elegans] 0.0
blast AAB52311 Serpentine receptor, class h protein 231 [Caenorhabditis elegans] ref|NP_504875.2| Serpentine Receptor, class H family member (srh-231) [Caenorhabditis elegans] 1.0E-152
blast NP_504982 Serpentine Receptor, class H family member (srh-234) [Caenorhabditis elegans] gb|AAG24047.2| Serpentine receptor, class h protein 234 [Caenorhabditis elegans] 1.0E-106
blast CAE75006 Hypothetical protein CBG22907 [Caenorhabditis briggsae] 9.0E-93
blast AAB52308 Hypothetical protein C03G6.8 [Caenorhabditis elegans] ref|NP_504873.1| C03G6.8 [Caenorhabditis elegans] 3.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.2E-49
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.0E-22
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.2E-49
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.3E-9
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.2E-49
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.0E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000031566 7 9-31,46-68,89-108,134-156,163-180,195-217,224-246
Sequence
Target Sequence 
>C. ELEGANS:191749_AT
gtgaggagccatgtccagtttcaaatagaaaatattggactcattgcaacatgttgacta
caatcgaatattttaaaactttcaaattttttcatgagttatcatcaagagataagttcg
ttttggctcgacatacacttttattatgtcaaaatttacacatatcgcattacacagttt
cacataattttgattcctgcctgcaaccagatggatcaatgcagccgaagcaagacgaac
ggcattacccaatagcaatgatgtcgattgagccactcgtccgatgcaaaatccagcatg
tagaatatgttctattgaaagctatctgtttttgtaatccagctgtcccagagctttctc
aaaatgcacaaaggatattggcaaaagaacgttattgttttgctgatatactcattaacc
actgccttcgaaattataccgacggtcctggacactttgcagaactgattgggattttta
atcttttggaaacacaacagagaatgttcaaagacttgcacattatgtatgttgttccgc
tgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGGAGCCATGTCCAGTTTCAAA 473 483 707 Antisense
CGTTTTGGCTCGACATACACTTTTA 75 245 825 Antisense
CATATCGCATTACACAGTTTCACAT 281 215 867 Antisense
ATTCCTGCCTGCAACCAGATGGATC 296 9 899 Antisense
AAGACGAACGGCATTACCCAATAGC 283 151 938 Antisense
TGAGCCACTCGTCCGATGCAAAATC 20 571 975 Antisense
TTTTGTAATCCAGCTGTCCCAGAGC 311 677 1036 Antisense
GTCCCAGAGCTTTCTCAAAATGCAC 700 475 1051 Antisense
GATATACTCATTAACCACTGCCTTC 389 425 1111 Antisense
TACCGACGGTCCTGGACACTTTGCA 402 613 1143 Antisense
ATTATGTATGTTGTTCCGCTGATGA 493 13 1228 Antisense
Sequence Source Affymetrix Proprietary Database