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[191747_s_at] multidrug resistance protein

Description W05E10.1 /REP_DB=WormBase Gene ID /WP=CE06548 /TR=Q23173 /GB=CAB01247.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=multidrug resistance protein
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 81      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 90      6grp_total > 91      4grp_total > 16      6grp_highest_sub > 05      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 93.5
(-3)
P 		113.2
(-2.1)
P 		167.6
(0.2)
P 		232.3
(3)
P 		139
B 107.6
(-2.9)
P 		143
(0.1)
P 		106.8
(-3)
P 		176.2
(3)
P 		69
C 122.9
(-3)
P 		155.2
(-1.6)
P 		174.1
(-0.8)
P 		259.9
(3)
P 		137
avr 108
(-3) 		137.1
(-1.5) 		149.5
(-0.8) 		222.8
(3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 136.7
(-1.5)
P 		134.9
(-1.6)
P 		116.3
(-2.5)
P 		205.3
(1.8)
P 		229.8
(3)
P 		106.7
(-3)
P 		123
B 122.7
(-2.9)
P 		177.6
(-0.2)
P 		120.7
(-3)
P 		242.4
(3)
P 		211.5
(1.5)
P 		144.4
(-1.8)
P 		122
C 102.6
(-3)
P 		187.8
(1.3)
P 		130.5
(-1.6)
P 		222.7
(3)
P 		216.1
(2.7)
P 		110.9
(-2.6)
P 		120
avr 120.7
(-3) 		166.8
(-0.3) 		122.5
(-2.9) 		223.5
(3) 		219.1
(2.7) 		120.7
(-3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 34
(-0.1)
P 		24.6
(-3)
P 		43.8
(3)
P 		34
(-0.1)
P 		19
B 34.3
(1.5)
P 		35.3
(2)
P 		24.7
(-3)
P 		37.5
(3)
P 		13
C 40.7
(-3)
P 		44.6
(-1.8)
P 		60.7
(3)
P 		43.8
(-2.1)
P 		20
avr 36.3
(-1.9) 		34.8
(-3) 		43.1
(3) 		38.4
(-0.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 25.2
(-3)
P 		48
(0.1)
P 		25.3
(-3)
P 		52.1
(0.7)
P 		69.3
(3)
P 		26
(-2.9)
P 		44
B 42.7
(-1.6)
P 		59.1
(0.2)
P 		29.3
(-3)
P 		64.2
(0.7)
P 		85.9
(3)
P 		53.8
(-0.4)
P 		57
C 38
(-2.2)
P 		57.3
(0.9)
P 		33.2
(-3)
P 		44.8
(-1.1)
P 		69.9
(3)
P 		37.1
(-2.4)
P 		37
avr 35.3
(-2.2) 		54.8
(0.3) 		29.3
(-3) 		53.7
(0.2) 		75
(3) 		39
(-1.7) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191747_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13411
Sequence Type Exemplar sequence
Representative Public ID W05E10.1 NCBI
Target Description W05E10.1 /REP_DB=WormBase Gene ID /WP=CE06548 /TR=Q23173 /GB=CAB01247.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=multidrug resistance protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073556(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073556 NCBI Caenorhabditis elegans W05E10.1 (W05E10.1) mRNA, complete cds. 11/11 None
SNAP00000019386 ENSEMBL cdna:SNAP chromosome:CEL140:V:11692115:11693983:-1 11/11 None
GENEFINDER00000019393 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11692115:11694209:-1 11/11 None
W05E10.1 ENSEMBL cdna:known chromosome:CEL140:V:11692011:11694285:-1 gene:W05E10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11692114-11694209(-) 100.0 100.0
Public Domain and Genome References
Gene Title multidrug resistance protein
Ensembl W05E10.1
Entrez Gene 179602 Entrez gene
SwissProt Q23173 EMBL-EBI
WormBase CE06548 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01247 Hypothetical protein W05E10.1 [Caenorhabditis elegans] ref|NP_505957.1| W05E10.1 [Caenorhabditis elegans] 0.0
blast CAE75314 Hypothetical protein CBG23285 [Caenorhabditis briggsae] 0.0
blast CAB05312 Hypothetical protein ZK550.2 [Caenorhabditis elegans] ref|NP_503058.1| ZK550.2 [Caenorhabditis elegans] 1.0E-101
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505957.1 12 31-53,68-90,103-125,129-148,168-190,205-227,257-279,289-311,323-345,371-393,413-435,439-461
W05E10.1 12 31-53,68-90,103-125,129-148,168-190,205-227,257-279,289-311,323-345,371-393,413-435,439-461
SNAP00000019386 11 20-42,54-76,86-108,120-142,157-179,210-232,242-264,276-298,324-346,366-388,392-414
GENEFINDER00000019393 12 31-53,68-90,103-125,129-148,168-190,205-227,257-279,289-311,323-345,371-393,413-435,439-461
Sequence
Target Sequence 
>C. ELEGANS:191747_S_AT
ttgaaacagcttcttgtgctctttcagtttcacagtatctggtgatcggtctaacaagag
ttggaaaaatagacaagagaattcaaattttatttggatgcattgttttctgtatttatt
acgttgttcttctcccatggccattttacccagaatcactactatataatccaaatgtaa
ccgacggagcgtgtacttatgaatggtgccaatatgttccaaaaattcccttcattgcct
acatcttggtatacgttctttgttttggaatcgcttttccctatattggaaattcaatag
gaacactgttctcagaagttcttggaccaagacaacaaggaactatgcaaggagtttttg
cattttttggaagtgttggaagatgtgcagctccattagttacaaccttcttcttcaact
catctggctacacatgggttagtgtagaaatgctcacatttcttattatcggagctttat
caacatgcatcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAAACAGCTTCTTGTGCTCTTTC 358 705 899 Antisense
GTGCTCTTTCAGTTTCACAGTATCT 618 479 914 Antisense
TATTTATTACGTTGTTCTTCTCCCA 680 661 1011 Antisense
TCCCATGGCCATTTTACCCAGAATC 412 595 1031 Antisense
GTAACCGACGGAGCGTGTACTTATG 240 1 1075 Antisense
TCCCTTCATTGCCTACATCTTGGTA 462 597 1125 Antisense
GGAATCGCTTTTCCCTATATTGGAA 356 533 1165 Antisense
GAAGATGTGCAGCTCCATTAGTTAC 83 339 1277 Antisense
TTCTTCAACTCATCTGGCTACACAT 196 691 1309 Antisense
AATGCTCACATTTCTTATTATCGGA 107 167 1347 Antisense
GGAGCTTTATCAACATGCATCTTCT 279 521 1369 Antisense
Sequence Source Affymetrix Proprietary Database