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[191746_at] protein tyrosine phosphatase

Description ZK484.7 /REP_DB=WormBase Gene ID /WP=CE15349 /TR=O44901 /GB=AAK39391.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster 6grp_total > 79      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 24.5
(-1.9)
A 		16.1
(-3)
A 		60.9
(3)
A 		39.7
(0.2)
A 		45
B 5.9
(-3)
A 		27
(1)
A 		15.7
(-1.2)
A 		37.8
(3)
A 		32
C 8.6
(-3)
A 		49.2
(2.7)
A 		20.8
(-1.3)
A 		51.1
(3)
A 		43
avr 13
(-3) 		30.8
(0.6) 		32.5
(0.9) 		42.9
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 26.2
(-1.4)
A 		33.7
(-0.9)
A 		2.2
(-3)
A 		41.5
(-0.4)
A 		41.4
(-0.4)
A 		93.2
(3)
P 		91
B 14.6
(-2)
A 		28.8
(-0.3)
A 		5.6
(-3)
A 		19
(-1.4)
A 		47.4
(1.8)
A 		57.4
(3)
P 		52
C 29.4
(-1)
A 		30.9
(-0.9)
A 		35
(-0.6)
A 		2.8
(-3)
A 		54.8
(0.9)
P 		82.8
(3)
P 		80
avr 23.4
(-2.1) 		31.1
(-1.4) 		14.3
(-3) 		21.1
(-2.4) 		47.9
(0.2) 		77.8
(3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.9
(-0.4)
A 		3.5
(-3)
A 		15.9
(3)
A 		5.8
(-1.9)
A 		12
B 1.9
(-3)
A 		6.7
(1.7)
A 		3.6
(-1.3)
A 		8
(3)
A 		6
C 2.8
(-3)
A 		14.2
(3)
A 		7.3
(-0.6)
A 		8.6
(0.1)
A 		11
avr 4.5
(-3) 		8.1
(1.9) 		8.9
(3) 		7.5
(1.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 4.8
(-1.8)
A 		12
(0.1)
A 		0.5
(-3)
A 		10.5
(-0.3)
A 		12.5
(0.2)
A 		22.7
(3)
P 		22
B 5.1
(-1.9)
A 		9.6
(-0.5)
A 		1.4
(-3)
A 		5
(-1.9)
A 		19.3
(2.4)
A 		21.4
(3)
P 		20
C 10.9
(-0.7)
A 		9.4
(-1.1)
A 		8.9
(-1.2)
A 		0.6
(-3)
A 		17.7
(0.8)
P 		27.7
(3)
P 		27
avr 6.9
(-2) 		10.3
(-1) 		3.6
(-3) 		5.4
(-2.5) 		16.5
(0.8) 		23.9
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191746_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1352
Sequence Type Exemplar sequence
Representative Public ID ZK484.7 NCBI
Target Description ZK484.7 /REP_DB=WormBase Gene ID /WP=CE15349 /TR=O44901 /GB=AAK39391.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059357(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059357 NCBI Caenorhabditis elegans ZK484.7 (ZK484.7) mRNA, complete cds. 11/11 None
SNAP00000003128 ENSEMBL cdna:SNAP chromosome:CEL140:I:6103266:6104651:-1 11/11 None
GENEFINDER00000003133 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6103266:6105295:-1 11/11 None
ZK484.7 ENSEMBL cdna:known chromosome:CEL140:I:6103266:6104651:-1 gene:ZK484.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6103265-6104651(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein tyrosine phosphatase
Ensembl ZK484.7
Entrez Gene 191327 Entrez gene
SwissProt O44901 EMBL-EBI
WormBase CE15349 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39391 Hypothetical protein ZK484.7 [Caenorhabditis elegans] ref|NP_491758.1| ZK484.7 [Caenorhabditis elegans] 0.0
blast CAE60604 Hypothetical protein CBG04241 [Caenorhabditis briggsae] 1.0E-148
blast CAE60604 Hypothetical protein CBG04241 [Caenorhabditis briggsae] 1.0E-147
blast CAE71335 Hypothetical protein CBG18235 [Caenorhabditis briggsae] 1.0E-128
blast CAE71335 Hypothetical protein CBG18235 [Caenorhabditis briggsae] 1.0E-127
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.3E-96
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.3E-96
Sequence
Target Sequence 
>C. ELEGANS:191746_AT
tagattcgatcttcatgctgtgcaatattatggagaaaggagctaagaagtgctgcgact
acttcgcttgtaaggataagcctgtgttggagtttgaggagaaggggcacaagatcattg
tcaaattcgagtcgactgggaagatgaagttcgaaaagaacactgacgccaagatcacgg
agacggttttcacagtagaaggacccggtggactcgctcagaaagtcacccagtatcact
ggattgattggcccgatcgtggagtgccaactgctgatatggcaattgtggagcttctgg
cgaaaacaagaccttccaagggtcccaccgttgtccactgctcggcaggaatcggtcgta
ccggctcagtggtcatgatcgagtacattttggatcaattgcttggtggtcagcaaatcg
aagaaaccgacaagattttgcaaaagatccgtgagcagcggaacaactctattcagacag
accaacaatatttattcgtgcatcaagtaatcctgaactattgtctggataaaaagatgt
ttgatgttgatgtgaagctggctcatcttgcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGATTCGATCTTCATGCTGTGCAA 512 653 443 Antisense
AGTGCTGCGACTACTTCGCTTGTAA 245 61 491 Antisense
GATCACGGAGACGGTTTTCACAGTA 457 421 615 Antisense
AGTAGAAGGACCCGGTGGACTCGCT 629 53 636 Antisense
CGCTCAGAAAGTCACCCAGTATCAC 309 255 657 Antisense
TCACTGGATTGATTGGCCCGATCGT 392 625 678 Antisense
CCGATCGTGGAGTGCCAACTGCTGA 93 263 695 Antisense
ATGGCAATTGTGGAGCTTCTGGCGA 689 51 721 Antisense
GCTCGGCAGGAATCGGTCGTACCGG 620 299 782 Antisense
GTACCGGCTCAGTGGTCATGATCGA 233 459 800 Antisense
TGTGAAGCTGGCTCATCTTGCATTC 239 557 993 Antisense
Sequence Source Affymetrix Proprietary Database