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[191745_at] C.elegans ZYG-11 protein like

Description F12F6.8 /REP_DB=WormBase Gene ID /WP=CE05596 /TR=Q19367 /GB=CAA97786.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=C.elegans ZYG-11 protein like
Cluster 6grp_total > 56      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 1.3
(-3)
A 		5
(-2.7)
A 		1.5
(-3)
A 		71.5
(3)
P 		70
B 21.8
(3)
A 		6.9
(-1.4)
A 		1.3
(-3)
A 		6
(-1.6)
A 		21
C 3.1
(-3)
A 		2.7
(-3)
A 		5.7
(-2.7)
A 		63.6
(3)
A 		61
avr 8.7
(-2.2) 		4.9
(-2.7) 		2.8
(-3) 		47
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 11.3
(-1.3)
A 		3.6
(-2.8)
A 		31.2
(2.5)
A 		2.7
(-3)
A 		15.3
(-0.6)
A 		33.7
(3)
A 		31
B 20.2
(2.9)
A 		20.6
(3)
A 		8.3
(-1.3)
A 		11.8
(-0.1)
A 		3.3
(-3)
A 		15.1
(1.1)
A 		17
C 1.1
(-3)
A 		3.2
(-2.4)
A 		5.5
(-1.8)
A 		1.8
(-2.8)
A 		8.5
(-1)
A 		23.6
(3)
A 		23
avr 10.9
(-1.2) 		9.1
(-1.8) 		15
(0.1) 		5.4
(-3) 		9
(-1.8) 		24.1
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.5
(-2.9)
A 		1.1
(-2.6)
A 		0.4
(-3)
A 		10.5
(3)
P 		10
B 6.9
(3)
A 		1.7
(-1.7)
A 		0.3
(-3)
A 		1.3
(-2.1)
A 		7
C 1
(-2.9)
A 		0.8
(-3)
A 		2
(-2.3)
A 		10.7
(3)
A 		10
avr 2.8
(-1.3) 		1.2
(-2.7) 		0.9
(-3) 		7.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.1
(-1.9)
A 		1.3
(-2.5)
A 		6.8
(1.9)
A 		0.7
(-3)
A 		4.6
(0.1)
A 		8.2
(3)
A 		8
B 7
(3)
A 		6.9
(2.9)
A 		2
(-2.3)
A 		3.1
(-1.1)
A 		1.3
(-3)
A 		5.6
(1.5)
A 		6
C 0.4
(-3)
A 		1
(-2.5)
A 		1.4
(-2.2)
A 		0.4
(-3)
A 		2.7
(-1.2)
A 		7.9
(3)
A 		8
avr 3.2
(-1.1) 		3.1
(-1.2) 		3.4
(-0.9) 		1.4
(-3) 		2.9
(-1.4) 		7.2
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191745_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9730
Sequence Type Exemplar sequence
Representative Public ID F12F6.8 NCBI
Target Description F12F6.8 /REP_DB=WormBase Gene ID /WP=CE05596 /TR=Q19367 /GB=CAA97786.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=C.elegans ZYG-11 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069775(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069775 NCBI Caenorhabditis elegans F12F6.8 (F12F6.8) mRNA, complete cds. 11/11 None
SNAP00000024851 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11554461:11558231:-1 11/11 None
GENEFINDER00000024862 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11554461:11556282:-1 11/11 None
F12F6.8 ENSEMBL cdna:known chromosome:CEL140:IV:11554461:11558231:-1 gene:F12F6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11554466-11558237(-) 100.0 100.0
Public Domain and Genome References
Gene Title C.elegans ZYG-11 protein like
Ensembl F12F6.8
Entrez Gene 184391 Entrez gene
SwissProt Q19367 EMBL-EBI
WormBase CE05596 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97786 Hypothetical protein F12F6.8 [Caenorhabditis elegans] ref|NP_502176.1| F12F6.8 [Caenorhabditis elegans] 0.0
blast CAA92801 Hypothetical protein C33A12.12 [Caenorhabditis elegans] emb|CAA22147.1| Hypothetical protein C33A12.12 [Caenorhabditis elegans] ref|NP_501674.1| C33A12.12 [Caenorhabditis elegans] emb|CAB16465.1| C33A12.12 [Caenorhabditis elegans] 3.0E-60
blast AAB37797 Hypothetical protein C50F2.1 [Caenorhabditis elegans] ref|NP_491255.2| C50F2.1 [Caenorhabditis elegans] 3.0E-52
blast AAB37797 Hypothetical protein C50F2.1 [Caenorhabditis elegans] ref|NP_491255.2| C50F2.1 [Caenorhabditis elegans] 4.0E-43
blast CAB02846 Hypothetical protein C48D1.1 [Caenorhabditis elegans] ref|NP_502537.2| C48D1.1 [Caenorhabditis elegans] 3.0E-35
Sequence
Target Sequence 
>C. ELEGANS:191745_AT
tcgaattcttgaacacctcacttgttggaaagagttctgcattgaaattgtgaaaaatgg
tggaatcggaattctgattgggtatatcgaaatgtttgataacgagttattccacataaa
aatactcaccgtattactcgctatatgcgatagactagaatacaaagacctaaagatttt
ctttgcggattgcacatacgtatttttagaaagaatgctcaacaaatggaatgatgatcg
aggatattatgtatggacaattcttacattccttgtagcaaatgcagataaaaatcaagt
tgaacttcctttctgtgactcagcaaatcaattaattttggaacgtgttccaactcatct
aactgatcaaatcagagaatatcttgcaaattattcacttcgcaccaaatttcgaaaaat
cgtttcgttatcaaaaagagatggtccaattttttgggttctggtatctatgaaaaaatt
cgtggaacaaaatacagacagagaatcgtttatttttacattcacacaaggacttttcaa
tgacgagatccgtaaacttgagacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAATTCTTGAACACCTCACTTGT 133 601 1389 Antisense
ATACTCACCGTATTACTCGCTATAT 689 23 1510 Antisense
GATTTTCTTTGCGGATTGCACATAC 44 429 1563 Antisense
GGACAATTCTTACATTCCTTGTAGC 685 525 1643 Antisense
TGAACTTCCTTTCTGTGACTCAGCA 645 573 1689 Antisense
AACGTGTTCCAACTCATCTAACTGA 8 145 1730 Antisense
ATATCTTGCAAATTATTCACTTCGC 175 21 1767 Antisense
ATTATTCACTTCGCACCAAATTTCG 103 13 1778 Antisense
ATCGTTTATTTTTACATTCACACAA 677 35 1893 Antisense
AGGACTTTTCAATGACGAGATCCGT 615 53 1917 Antisense
GACGAGATCCGTAAACTTGAGACTA 355 379 1930 Antisense
Sequence Source Affymetrix Proprietary Database