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[191741_at] protein-tyrosine phosphatase

Description H06O01.4 /REP_DB=WormBase Gene ID /WP=CE11576 /TR=O17906 /GB=CAB07479.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 59      4grp_total > 0      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 30.8
(3)
A 		6.5
(-2.2)
A 		13.1
(-0.8)
A 		2.6
(-3)
A 		28
B 3.4
(-3)
A 		4.2
(-2.8)
A 		12.1
(-1.2)
A 		32.3
(3)
A 		29
C 4
(-3)
A 		7.2
(-2.6)
A 		13
(-1.8)
A 		50.4
(3)
A 		46
avr 12.7
(-1.2) 		6
(-3) 		12.7
(-1.2) 		28.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 23.3
(2.5)
A 		10.5
(-0.9)
A 		2.8
(-3)
A 		25
(3)
A 		4.7
(-2.5)
A 		10.7
(-0.9)
A 		22
B 7.1
(-2.2)
A 		19.9
(0.6)
A 		3.7
(-3)
A 		7.5
(-2.2)
A 		19
(0.4)
A 		30.8
(3)
A 		27
C 3.9
(-2.2)
A 		5.5
(-1.1)
A 		8.4
(0.8)
A 		4.4
(-1.8)
A 		11.8
(3)
A 		2.6
(-3)
A 		9
avr 11.4
(1) 		12
(1.3) 		5
(-3) 		12.3
(1.5) 		11.8
(1.2) 		14.7
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.2
(3)
A 		1.4
(-2.4)
A 		3.4
(-1.3)
A 		0.4
(-3)
A 		11
B 1.1
(-2.9)
A 		1
(-3)
A 		2.8
(-1.2)
A 		6.9
(3)
A 		6
C 1.3
(-3)
A 		2.1
(-2.3)
A 		4.5
(-0.3)
A 		8.5
(3)
A 		7
avr 4.5
(1.7) 		1.5
(-3) 		3.6
(0.3) 		5.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 4.3
(0.9)
A 		3.7
(0.3)
A 		0.6
(-3)
A 		6.3
(3)
A 		1.4
(-2.2)
A 		2.6
(-0.9)
A 		6
B 2.5
(-2.1)
A 		6.6
(0.2)
A 		0.9
(-3)
A 		2
(-2.4)
A 		7.7
(0.8)
A 		11.5
(3)
A 		11
C 1.5
(-1.8)
A 		1.7
(-1.3)
A 		2.1
(-0.5)
A 		0.9
(-3)
A 		3.8
(3)
A 		0.9
(-3)
A 		3
avr 2.8
(-0.5) 		4
(1.4) 		1.2
(-3) 		3.1
(0) 		4.3
(1.9) 		5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191741_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1478
Sequence Type Exemplar sequence
Representative Public ID H06O01.4 NCBI
Target Description H06O01.4 /REP_DB=WormBase Gene ID /WP=CE11576 /TR=O17906 /GB=CAB07479.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059591 NCBI Caenorhabditis elegans H06O01.4 (H06O01.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000021147 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7011103:7012177:-1 11/11 None
H06O01.4 ENSEMBL cdna:known chromosome:CEL140:I:7011068:7012177:-1 gene:H06O01.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7010998-7012108(-) 91.92 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl H06O01.4
Entrez Gene 186701 Entrez gene
SwissProt O17906 EMBL-EBI
WormBase CE11576 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07479 Hypothetical protein H06O01.4 [Caenorhabditis elegans] ref|NP_491992.1| H06O01.4 [Caenorhabditis elegans] 1.0E-132
blast CAB07479 Hypothetical protein H06O01.4 [Caenorhabditis elegans] ref|NP_491992.1| H06O01.4 [Caenorhabditis elegans] 1.0E-126
blast CAA95832 Hypothetical protein M05B5.1 [Caenorhabditis elegans] ref|NP_492030.1| M05B5.1 [Caenorhabditis elegans] 6.0E-90
blast CAA95832 Hypothetical protein M05B5.1 [Caenorhabditis elegans] ref|NP_492030.1| M05B5.1 [Caenorhabditis elegans] 5.0E-84
blast CAA94276 Hypothetical protein K07F5.6 [Caenorhabditis elegans] ref|NP_501764.2| K07F5.6 [Caenorhabditis elegans] 2.0E-70
blast CAA94276 Hypothetical protein K07F5.6 [Caenorhabditis elegans] ref|NP_501764.2| K07F5.6 [Caenorhabditis elegans] 6.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 8.3E-18
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.8E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491992.1 1 202-224
H06O01.4 1 202-224
Sequence
Target Sequence 
>C. ELEGANS:191741_AT
tttccgtggggcctcaggtacgaggcgtccatagtgtggggaaagaacgagcgagtttct
cgcttcgtgattggtcgatttcaaaaagtcaataatctccatcattcatttttccctctg
tcgacaaatcactacttgaatctggaaggttggctgatcaacactagagctgtagacgta
gatcaactatgcaaaaactgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCGTGGGGCCTCAGGTACGAGG 46 665 106 Antisense
TGGGGCCTCAGGTACGAGGCGTCCA 125 553 112 Antisense
GTACGAGGCGTCCATAGTGTGGGGA 241 459 123 Antisense
AGTGTGGGGAAAGAACGAGCGAGTT 499 51 138 Antisense
GAACGAGCGAGTTTCTCGCTTCGTG 360 347 150 Antisense
GTTTCTCGCTTCGTGATTGGTCGAT 374 449 160 Antisense
AAAAGTCAATAATCTCCATCATTCA 125 133 189 Antisense
GTCAATAATCTCCATCATTCATTTT 486 463 193 Antisense
TTTTTCCCTCTGTCGACAAATCACT 148 675 214 Antisense
AGAGCTGTAGACGTAGATCAACTAT 527 67 271 Antisense
GTAGATCAACTATGCAAAAACTGGA 269 457 283 Antisense
Sequence Source Affymetrix Proprietary Database