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[191740_s_at] nucleoside diphosphate kinase

Description F25H2.5 /REP_DB=WormBase Gene ID /WP=CE09650 /TR=Q93576 /GB=CAB02101.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=nucleoside diphosphate kinase
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 40      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 19      6grp_total > 52      4grp_total > 25      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14501
1 2 3 4 range
A 24116
(-3)
P 		29040
(-0.6)
P 		30544.3
(0.2)
P 		36211.9
(3)
P 		12096
B 23448.3
(-3)
P 		28165.8
(0.3)
P 		28735.2
(0.7)
P 		32044.9
(3)
P 		8597
C 21711.2
(-3)
P 		27534.8
(-0.3)
P 		23558.3
(-2.2)
P 		34862.9
(3)
P 		13152
avr 23091.8
(-3) 		28246.9
(-0.3) 		27612.6
(-0.6) 		34373.2
(3) 		11281

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10242
1 2 3 4 5 6 range
A 22801.2
(0.1)
P 		20916.8
(-1.3)
P 		26497.4
(3)
P 		22531.1
(-0.1)
P 		18722.6
(-3)
P 		20342.4
(-1.7)
P 		7775
B 18047.7
(-2)
P 		20216.9
(-0.6)
P 		25744
(3)
P 		20298.9
(-0.5)
P 		17130
(-2.6)
P 		16440.9
(-3)
P 		9303
C 17087.3
(-2.4)
P 		20887.9
(0.2)
P 		24904.1
(3)
P 		21198.6
(0.4)
P 		19241.5
(-0.9)
P 		16255.8
(-3)
P 		8648
avr 19312.1
(-1.8) 		20673.9
(-0.8) 		25715.2
(3) 		21342.9
(-0.3) 		18364.7
(-2.5) 		17679.7
(-3) 		8036
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3480
1 2 3 4 range
A 8780.6
(3)
P 		6303.8
(-1.3)
P 		7984.9
(1.6)
P 		5300.7
(-3)
P 		3480
B 7477.5
(3)
P 		6956.3
(-0.8)
P 		6658.6
(-3)
P 		6828.8
(-1.8)
P 		819
C 7187
(0.4)
P 		7916.4
(2.2)
P 		8210.8
(3)
P 		5878.4
(-3)
P 		2332
avr 7815
(3) 		7058.8
(0.5) 		7618.1
(2.3) 		6002.6
(-3) 		1812

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3236
1 2 3 4 5 6 range
A 4203.2
(-3)
P 		7439
(3)
P 		5770.6
(-0.1)
P 		5714.4
(-0.2)
P 		5649.7
(-0.3)
P 		4952.7
(-1.6)
P 		3236
B 6279.7
(0.4)
P 		6729.3
(2.1)
P 		6251.4
(0.3)
P 		5376.5
(-3)
P 		6959.7
(3)
P 		6130.7
(-0.1)
P 		1583
C 6333.5
(2.9)
P 		6373.5
(3)
P 		6338.5
(2.9)
P 		4263
(-3)
P 		6226.3
(2.6)
P 		5441.8
(0.4)
P 		2111
avr 5605.5
(-1.3) 		6847.3
(3) 		6120.2
(0.5) 		5118
(-3) 		6278.6
(1) 		5508.4
(-1.6) 		1729
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191740_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.505
Sequence Type Exemplar sequence
Representative Public ID F25H2.5 NCBI
Target Description F25H2.5 /REP_DB=WormBase Gene ID /WP=CE09650 /TR=Q93576 /GB=CAB02101.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=nucleoside diphosphate kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060360(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060360 NCBI Caenorhabditis elegans F25H2.5 (F25H2.5) mRNA, complete cds. 11/11 None
SNAP00000042618 ENSEMBL cdna:SNAP chromosome:CEL140:I:10561315:10562002:-1 11/11 None
GENEFINDER00000042630 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10561315:10562002:-1 11/11 None
F25H2.5.3 ENSEMBL cdna:known chromosome:CEL140:I:10561233:10562010:-1 gene:F25H2.5 11/11 None
F25H2.5.1 ENSEMBL cdna:known chromosome:CEL140:I:10561233:10562010:-1 gene:F25H2.5 11/11 None
F25H2.5.2 ENSEMBL cdna:known chromosome:CEL140:I:10561233:10562139:-1 gene:F25H2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10561245-10561846(-) 100.0 100.0
Public Domain and Genome References
Gene Title nucleoside diphosphate kinase
Ensembl F25H2.5
Entrez Gene 172939 Entrez gene
SwissProt Q93576 EMBL-EBI
WormBase CE09650 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247376_AT nucleotide diphosphate kinase II, chloroplast (NDPK2) at
ATGENOME1:18046_S_AT nucleotide diphosphate kinase II, chloroplast (NDPK2) at
ATGENOME1:16125_S_AT nucleotide diphosphate kinase II, chloroplast (NDPK2) at
ATGENOME1:15634_S_AT nucleotide diphosphate kinase II, chloroplast (NDPK2) at
CANINE:1589184_AT non-metastatic cells 2, protein (NM23B) expressed in cfa
CANINE_2:CFA.13586.1.A1_AT non-metastatic cells 2, protein (NM23B) expressed in cfa
CANINE_2:CFA.5818.1.A1_AT non-metastatic cells 2, protein (NM23B) expressed in cfa
CANINE_2:CFA.5818.2.S1_S_AT non-metastatic cells 2, protein (NM23B) expressed in cfa
CANINE_2:CFAAFFX.26483.1.S1_AT non-metastatic cells 2, protein (NM23B) expressed in cfa
CANINE_2:CFAAFFX.26483.1.S1_S_AT non-metastatic cells 2, protein (NM23B) expressed in cfa
CANINE:1585196_AT Nucleoside diphosphate kinase B cfa
DROSOPHILA_2:1637980_AT abnormal wing discs dm
DROSGENOME1:142560_AT abnormal wing discs dm
CHICKEN:GGA.2020.1.S1_AT non-metastatic cells 2, protein (NM23B) expressed in gga
CHICKEN:GGAAFFX.1865.1.S1_AT non-metastatic cells 2, protein (NM23B) expressed in gga
HG-U95AV2:1980_S_AT non-metastatic cells 2, protein (NM23B) expressed in hs
HC-G110:1980_S_AT non-metastatic cells 2, protein (NM23B) expressed in hs
HG-U133_PLUS_2:201268_AT non-metastatic cells 2, protein (NM23B) expressed in hs
HG-U133A:201268_AT non-metastatic cells 2, protein (NM23B) expressed in hs
HG-FOCUS:201268_AT non-metastatic cells 2, protein (NM23B) expressed in hs
HG-U133A_2:201268_AT non-metastatic cells 2, protein (NM23B) expressed in hs
U133_X3P:G4505408_3P_S_AT non-metastatic cells 2, protein (NM23B) expressed in hs
HG-U95AV2:33415_AT non-metastatic cells 2, protein (NM23B) expressed in hs
HG-U95E:77413_AT non-metastatic cells 2, protein (NM23B) expressed in hs
MU11KSUBB:MSA.18493.0_F_AT expressed in non-metastatic cells 2, protein mm
MU11KSUBB:X68193_F_AT expressed in non-metastatic cells 2, protein mm
MU11KSUBB:MSA.26582.0_F_AT expressed in non-metastatic cells 2, protein mm
MG-U74AV2:92625_AT expressed in non-metastatic cells 2, protein mm
MOE430A:1448808_A_AT expressed in non-metastatic cells 2, protein mm
MOUSE430A_2:1448808_A_AT expressed in non-metastatic cells 2, protein mm
MOUSE430_2:1448808_A_AT expressed in non-metastatic cells 2, protein mm
RAE230A:1367766_AT expressed in non-metastatic cells 2 rn
RAT230_2:1367766_AT expressed in non-metastatic cells 2 rn
RT-U34:M91597_S_AT expressed in non-metastatic cells 2 rn
RG-U34A:M91597_S_AT expressed in non-metastatic cells 2 rn
YEAST_2:1772255_AT Nucleoside diphosphate kinase, catalyzes the transfer of gamma phosphates from nucleoside triphosphates, usually ATP, to nucleoside diphosphates by a mechanism that involves formation of an autophosphorylated enzyme intermediate Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6183 GTP biosynthesis inferred from electronic annotation QuickGO AmiGO
6228 UTP biosynthesis inferred from electronic annotation QuickGO AmiGO
6241 CTP biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4550 nucleoside diphosphate kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02101 Hypothetical protein F25H2.5 [Caenorhabditis elegans] ref|NP_492761.1| F25H2.5 [Caenorhabditis elegans] 1.0E-85
blast CAB02101 Hypothetical protein F25H2.5 [Caenorhabditis elegans] ref|NP_492761.1| F25H2.5 [Caenorhabditis elegans] 3.0E-85
blast CAE58974 Hypothetical protein CBG02247 [Caenorhabditis briggsae] 8.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR001564 EMBL-EBI Nucleoside diphosphate kinase 1.1E-97
Pfam IPR001564 EMBL-EBI Nucleoside diphosphate kinase 1.1E-97
Sequence
Target Sequence 
>C. ELEGANS:191740_S_AT
acactgagagaaccttcatcgccatcaagcctgatggagtccaccgtggtctcgtcggaa
agatcatcgctcgttttgaagagcgcggatacaagcttgttgctctcaagcagatgaccg
cctccaaggcccatcttgaggttcactaccaagacctcaaggacaaaccattcttcccat
ccctcatcgagtacatgagctctggaccagtcgtcgccatggtctggcaaggacttgacg
tcgtcaagcaaggacgttccatgctcggagctaccaacccactcgcttccgccccaggaa
ccatccgcggagacttctgcatccaaaccggacgcaatatctgccacggatccgatgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACTGAGAGAACCTTCATCGCCAT 292 109 20 Antisense
TCCACCGTGGTCTCGTCGGAAAGAT 353 353 59 Antisense
GTCGGAAAGATCATCGCTCGTTTTG 208 473 73 Antisense
GCGCGGATACAAGCTTGTTGCTCTC 341 287 102 Antisense
GCCTCCAAGGCCCATCTTGAGGTTC 98 283 139 Antisense
GTTCACTACCAAGACCTCAAGGACA 495 445 160 Antisense
TCCCATCCCTCATCGAGTACATGAG 111 599 194 Antisense
GTCGTCGCCATGGTCTGGCAAGGAC 415 473 229 Antisense
ACGTTCCATGCTCGGAGCTACCAAC 166 93 273 Antisense
TTCTGCATCCAAACCGGACGCAATA 149 693 334 Antisense
CAATATCTGCCACGGATCCGATGCC 370 181 354 Antisense
Sequence Source Affymetrix Proprietary Database