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[191739_at] protein-tyrosine phosphatase

Description C16A3.2 /REP_DB=WormBase Gene ID /WP=CE08188 /TR=Q9TY00 /GB=AAD31049.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 76      4grp_high_8_8 > 27      6grp_highest_nonorm > 90      6grp_total > 77      4grp_total > 37      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 140.9
(3)
P 		116.4
(1.3)
P 		55.4
(-3)
A 		103.9
(0.4)
P 		86
B 99.5
(1.8)
P 		109.9
(3)
P 		57
(-3)
A 		102.3
(2.1)
P 		53
C 144
(3)
P 		104.7
(0.2)
P 		60.8
(-3)
P 		80.3
(-1.6)
P 		83
avr 128.1
(3) 		110.3
(1.5) 		57.7
(-3) 		95.5
(0.2) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 86.1
(-3)
P 		105.6
(-2.1)
P 		163.4
(0.5)
P 		141.9
(-0.5)
P 		131.8
(-0.9)
P 		218.6
(3)
P 		133
B 113.4
(-1.4)
P 		160.3
(0.9)
P 		79.4
(-3)
P 		109.3
(-1.6)
P 		139.7
(-0.1)
P 		203.2
(3)
P 		124
C 134.5
(-2.1)
P 		157.7
(-1)
P 		122.5
(-2.6)
P 		120.3
(-2.7)
P 		114.8
(-3)
P 		244
(3)
P 		129
avr 111.3
(-3) 		141.2
(-1.4) 		121.8
(-2.4) 		123.8
(-2.3) 		128.8
(-2.1) 		221.9
(3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 51.3
(3)
P 		25.3
(-1.2)
P 		14.5
(-3)
A 		15.2
(-2.9)
P 		37
B 31.7
(3)
P 		27.2
(1.5)
P 		13.2
(-3)
A 		21.8
(-0.2)
P 		19
C 47.7
(3)
P 		30.1
(-0.1)
P 		21.2
(-1.6)
P 		13.5
(-3)
P 		34
avr 43.6
(3) 		27.5
(-0.5) 		16.3
(-3) 		16.8
(-2.9) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 15.9
(-3)
P 		37.5
(0.5)
P 		35.6
(0.2)
P 		36
(0.2)
P 		39.8
(0.8)
P 		53.2
(3)
P 		37
B 39.4
(-0.9)
P 		53.4
(0.6)
P 		19.3
(-3)
P 		28.9
(-2)
P 		56.7
(1)
P 		75.8
(3)
P 		57
C 49.9
(-0.3)
P 		48.1
(-0.5)
P 		31.2
(-2.3)
P 		24.2
(-3)
P 		37.1
(-1.7)
P 		81.7
(3)
P 		58
avr 35.1
(-2.1) 		46.3
(-0.5) 		28.7
(-3) 		29.7
(-2.9) 		44.5
(-0.7) 		70.2
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191739_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6057
Sequence Type Exemplar sequence
Representative Public ID C16A3.2 NCBI
Target Description C16A3.2 /REP_DB=WormBase Gene ID /WP=CE08188 /TR=Q9TY00 /GB=AAD31049.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065998(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065998 NCBI Caenorhabditis elegans C16A3.2 (C16A3.2) mRNA, complete cds. 11/11 None
SNAP00000030745 ENSEMBL cdna:SNAP chromosome:CEL140:III:6389770:6390586:1 11/11 None
GENEFINDER00000030793 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6389770:6390586:1 11/11 None
C16A3.2 ENSEMBL cdna:known chromosome:CEL140:III:6389770:6390586:1 gene:C16A3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6389768-6390585(+) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl C16A3.2
Entrez Gene 182649 Entrez gene
SwissProt Q9TY00 EMBL-EBI
WormBase CE08188 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
8138 protein tyrosine/serine/threonine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD31049 Hypothetical protein C16A3.2 [Caenorhabditis elegans] ref|NP_498399.1| C16A3.2 [Caenorhabditis elegans] 1.0E-122
blast F88481 protein C16A3.1 [imported] - Caenorhabditis elegans 1.0E-119
blast CAE64419 Hypothetical protein CBG09113 [Caenorhabditis briggsae] 9.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR000340 EMBL-EBI Dual specificity protein phosphatase 1.8E-32
Sequence
Target Sequence 
>C. ELEGANS:191739_AT
gattctgccaaatctctacttatccgggagaactgtgtctcagaacagcgaacttttgaa
ggagaaaaatattacgacagtgatcaatgtatcagatcgggaagttgttaactacaagaa
taatcaaaagttcatcaaaaactaccgattctatgcaatgtccgacacagcaagtgcgaa
gtttgatggaattattgaagaagcagttcgaataattcacgattcaagatctaaagaaga
aggtgttctcgttcattgcttcctcggtgtctccagaagtgcaactttagtcgcattcta
cctgatatcagctctctccatcaactggcgggacgcagttgacttcattcatcatagaag
attctctgcaaacccgaattttggatttttacatcagttgaaagtctactcaacaacgaa
agctaaagaatttcgaaatcaactaatcagcgaacgatgtctcagaatgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTGCCAAATCTCTACTTATCC 41 433 150 Antisense
GTGTCTCAGAACAGCGAACTTTTGA 287 485 184 Antisense
AACTACCGATTCTATGCAATGTCCG 467 139 289 Antisense
GCAATGTCCGACACAGCAAGTGCGA 66 323 304 Antisense
CTTCCTCGGTGTCTCCAGAAGTGCA 705 217 408 Antisense
GTGCAACTTTAGTCGCATTCTACCT 49 481 428 Antisense
ATTCTACCTGATATCAGCTCTCTCC 494 11 444 Antisense
CTCCATCAACTGGCGGGACGCAGTT 300 235 465 Antisense
GGACGCAGTTGACTTCATTCATCAT 515 523 480 Antisense
GAAGATTCTCTGCAAACCCGAATTT 137 337 506 Antisense
CAGCGAACGATGTCTCAGAATGCGA 563 203 597 Antisense
Sequence Source Affymetrix Proprietary Database