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[191735_at] Gamma-glutamyltranspeptidase

Description T03D8.6 /REP_DB=WormBase Gene ID /WP=CE18924 /TR=Q9XTY7 /GB=CAB07404.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Gamma-glutamyltranspeptidase
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      4grp_highest_8_8 > 01      4grp_high_8_8 > 54      6grp_highest_nonorm > 44      6grp_total > 81      4grp_total > 50      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1450
1 2 3 4 range
A 582.6
(-2)
P 		1681.7
(3)
P 		1426.2
(1.8)
P 		349.8
(-3)
P 		1332
B 698.7
(-2)
P 		1533.9
(1.8)
P 		1799.7
(3)
P 		471.8
(-3)
P 		1328
C 755.3
(-1.8)
P 		1644.9
(3)
P 		1461
(2)
P 		521.5
(-3)
P 		1123
avr 678.9
(-1.8) 		1620.2
(3) 		1562.3
(2.7) 		447.7
(-3) 		1173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2716
1 2 3 4 5 6 range
A 1201.6
(-1.2)
P 		1155.3
(-1.3)
P 		1413
(-0.7)
P 		3105.3
(3)
P 		1928.2
(0.4)
P 		389.8
(-3)
P 		2716
B 873.8
(-2)
P 		1027.3
(-1.6)
P 		1287.1
(-0.9)
P 		2753.8
(3)
P 		1815
(0.5)
P 		512.4
(-3)
P 		2241
C 722.6
(-2.4)
P 		1207.2
(-1.2)
P 		1783.5
(0.2)
P 		2942.7
(3)
P 		1803.6
(0.2)
P 		469
(-3)
P 		2474
avr 932.7
(-1.8) 		1129.9
(-1.4) 		1494.5
(-0.5) 		2933.9
(3) 		1848.9
(0.4) 		457.1
(-3) 		2477
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 458
1 2 3 4 range
A 212.1
(0)
P 		365.1
(2.9)
P 		372.8
(3)
P 		51.2
(-3)
P 		322
B 222.8
(-0.7)
P 		378.8
(2.3)
P 		417
(3)
P 		100.5
(-3)
P 		317
C 250
(-0.7)
P 		472.9
(2.5)
P 		509.2
(3)
P 		87.9
(-3)
P 		421
avr 228.3
(-0.5) 		405.6
(2.5) 		433
(3) 		79.9
(-3) 		353

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 693
1 2 3 4 5 6 range
A 221.5
(-1.9)
P 		410.9
(-0.3)
P 		307.7
(-1.2)
P 		787.6
(3)
P 		581.9
(1.2)
P 		94.9
(-3)
P 		693
B 304
(-1.8)
P 		342
(-1.3)
P 		312.5
(-1.7)
P 		729.4
(2.9)
P 		737.4
(3)
P 		191.1
(-3)
P 		546
C 267.9
(-1.5)
P 		368.4
(-0.1)
P 		453.9
(1.1)
P 		591.8
(3)
P 		583.6
(2.9)
P 		157
(-3)
P 		435
avr 264.5
(-1.7) 		373.8
(-0.6) 		358
(-0.7) 		702.9
(3) 		634.3
(2.3) 		147.7
(-3) 		555
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191735_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13114
Sequence Type Exemplar sequence
Representative Public ID T03D8.6 NCBI
Target Description T03D8.6 /REP_DB=WormBase Gene ID /WP=CE18924 /TR=Q9XTY7 /GB=CAB07404.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Gamma-glutamyltranspeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075616(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075616 NCBI Caenorhabditis elegans T03D8.6 (Gamma-glutamyltranspeptidase) mRNA, complete cds. 11/11 None
SNAP00000040017 ENSEMBL cdna:SNAP chromosome:CEL140:V:20814702:20816922:-1 11/11 None
GENEFINDER00000040030 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20814702:20816922:-1 11/11 None
T03D8.6 ENSEMBL cdna:known chromosome:CEL140:V:20814636:20816956:-1 gene:T03D8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20814701-20816922(-) 100.0 100.0
Public Domain and Genome References
Gene Title Gamma-glutamyltranspeptidase
Ensembl T03D8.6
Entrez Gene 180364 Entrez gene
SwissProt Q9XTY7 EMBL-EBI
WormBase CE37271 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:253708_AT gamma-glutamyltranspeptidase family protein at
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3840 gamma-glutamyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07404 Hypothetical protein T03D8.6 [Caenorhabditis elegans] ref|NP_508017.2| T03D8.6 [Caenorhabditis elegans] 0.0
blast CAE61634 Hypothetical protein CBG05566 [Caenorhabditis briggsae] 0.0
blast AAD09400 gamma-glutamyl transpeptidase precursor [Brugia malayi] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 1.0E-126
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191735_AT
attgcgcaatacgtaccaccagatcatggtacaagccatgtctcggcgatggatcaatat
ggaaatggcgtatctgctacaacaactattaacagatggtttggagccgccgttgagtca
tctgaatatggtattttgtggaacgatgaaatggacgacttcagcactccgggaatggag
aatggatttggtttcgctccatctgagacaaacttcattgaacctggaaaacgcccaatg
agtagtatgagcccaatggttatatttgatcatgtcacaaaaaaagtgagaatggtgatt
ggaggttcaggcggttcaaaaattatttccgcgttggcgaagtccatcgtacggtctctc
attttccatgattcaatcaaaaaagctattgacgccccaatgattcacaatcagttcaca
ccagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCGCAATACGTACCACCAGATC 502 5 1171 Antisense
ATGGTACAAGCCATGTCTCGGCGAT 573 49 1196 Antisense
GAAATGGCGTATCTGCTACAACAAC 376 361 1232 Antisense
TAACAGATGGTTTGGAGCCGCCGTT 257 639 1260 Antisense
GCCGCCGTTGAGTCATCTGAATATG 469 285 1276 Antisense
TGAAATGGACGACTTCAGCACTCCG 198 573 1317 Antisense
TTTGGTTTCGCTCCATCTGAGACAA 188 665 1357 Antisense
GGTGATTGGAGGTTCAGGCGGTTCA 678 499 1464 Antisense
ATTTCCGCGTTGGCGAAGTCCATCG 638 9 1495 Antisense
TTGACGCCCCAATGATTCACAATCA 354 705 1559 Antisense
GATTCACAATCAGTTCACACCAGAT 286 431 1572 Antisense
Sequence Source Affymetrix Proprietary Database