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[191734_at] 7TM chemoreceptor, srh family

Description C49D10.3 /REP_DB=WormBase Gene ID /WP=CE08844 /GEN=srh-250 /TR=O16608 /GB=AAC71178.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 20      4grp_total > 19      6grp_cgc > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 32
(0.8)
A 		40
(2)
A 		6.8
(-3)
A 		46.4
(3)
A 		40
B 23.9
(-2.9)
A 		40
(0.3)
A 		23.4
(-3)
A 		53.4
(3)
A 		30
C 45.1
(-1.5)
A 		43.2
(-1.6)
A 		18.3
(-3)
A 		126
(3)
A 		108
avr 33.7
(-1.2) 		41.1
(-0.5) 		16.2
(-3) 		75.3
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 49.9
(1.3)
A 		32
(-2.4)
A 		58
(3)
A 		35.6
(-1.6)
A 		46.1
(0.5)
A 		29
(-3)
A 		29
B 29
(0.4)
A 		41.2
(3)
A 		26.7
(-0.1)
A 		12.7
(-3)
A 		20.9
(-1.3)
A 		25.7
(-0.3)
A 		29
C 6.3
(-3)
A 		57.4
(3)
A 		39
(0.8)
A 		40.1
(1)
A 		20.3
(-1.4)
A 		32.6
(0.1)
A 		51
avr 28.4
(-3) 		43.5
(3) 		41.2
(2.1) 		29.5
(-2.6) 		29.1
(-2.7) 		29.1
(-2.7) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 11.7
(3)
A 		8.7
(1.2)
A 		1.8
(-3)
A 		6.8
(0)
A 		10
B 7.6
(-0.8)
A 		9.9
(1.5)
A 		5.4
(-3)
A 		11.4
(3)
A 		6
C 14.9
(0.4)
A 		12.4
(-0.6)
A 		6.4
(-3)
A 		21.2
(3)
A 		15
avr 11.4
(1.8) 		10.3
(1) 		4.5
(-3) 		13.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.2
(-1.1)
A 		11.4
(0.8)
A 		12.6
(1.9)
A 		9
(-1.3)
A 		13.9
(3)
A 		7.1
(-3)
A 		7
B 10.1
(0.9)
A 		13.7
(3)
A 		6.5
(-1.2)
A 		3.4
(-3)
A 		8.5
(-0)
A 		9.6
(0.6)
A 		10
C 2.3
(-3)
A 		17.5
(3)
A 		9.9
(0)
A 		8.1
(-0.7)
A 		6.6
(-1.3)
A 		10.9
(0.4)
A 		15
avr 7.2
(-2.7) 		14.2
(3) 		9.7
(-0.6) 		6.8
(-3) 		9.7
(-0.6) 		9.2
(-1.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191734_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5801
Sequence Type Exemplar sequence
Representative Public ID C49D10.3 NCBI
Target Description C49D10.3 /REP_DB=WormBase Gene ID /WP=CE08844 /GEN=srh-250 /TR=O16608 /GB=AAC71178.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062280(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062280 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-250) (srh-250) mRNA, complete cds. 11/11 None
C49D10.3 ENSEMBL cdna:known chromosome:CEL140:II:3878623:3879884:1 gene:C49D10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008444 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3878621-3879883(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-250
Ensembl C49D10.3
Entrez Gene 183606 Entrez gene
SwissProt O16608 EMBL-EBI
WormBase CE08844 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC71178 Serpentine receptor, class h protein 250 [Caenorhabditis elegans] ref|NP_494681.1| Serpentine Receptor, class H family member (srh-250) [Caenorhabditis elegans] 1.0E-180
blast CAB07488 Hypothetical protein T19C9.3 [Caenorhabditis elegans] ref|NP_507362.1| Serpentine Receptor, class H family member (srh-252) [Caenorhabditis elegans] 2.0E-91
blast CAB04630 Hypothetical protein R08H2.4 [Caenorhabditis elegans] ref|NP_506819.1| Serpentine Receptor, class H family member (srh-251) [Caenorhabditis elegans] 3.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494681.1 7 15-37,57-76,91-113,134-153,188-210,243-265,275-294
C49D10.3 7 15-37,57-76,91-113,134-153,188-210,243-265,275-294
Sequence
Target Sequence 
>C. ELEGANS:191734_AT
ctctcgctggcacaagttccgaaaggcctacctaccgcttatgtgcctattccctcccac
ctacaccataccgattttcgcttcactccctgagcaagagcatgctcgtgaacatgtctt
gaaatccatcccatgtcttaaagtgttttctctgaattttcaggaattattcgttttgac
tctgaaaccaattgtaccagcgatttgtggtgtatttgcagcgagtatcgcaattttccc
gattgtaatatttttcacactaactttccggcagcttttgaaaagacagaaaaactataa
atactcctatcgaactgtgagagttcaaaaaaatttcctagtatccatgtcattgcaatt
tgtttttatcatgacttttatgtttatcccctgcgtgcttttactgtatattgtaatttt
caagtatcacaatcaaattctcaataactttattataattttgttctcatgttttggaac
cggatctactgttgtgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCGCTGGCACAAGTTCCGAAAG 292 231 387 Antisense
ACCTACACCATACCGATTTTCGCTT 322 87 445 Antisense
TGAACATGTCTTGAAATCCATCCCA 630 573 495 Antisense
ATCCATCCCATGTCTTAAAGTGTTT 99 41 510 Antisense
GAAACCAATTGTACCAGCGATTTGT 623 355 570 Antisense
CAGCGAGTATCGCAATTTTCCCGAT 15 203 605 Antisense
CACTAACTTTCCGGCAGCTTTTGAA 371 197 644 Antisense
ATTTCCTAGTATCCATGTCATTGCA 367 17 719 Antisense
CATGACTTTTATGTTTATCCCCTGC 314 211 756 Antisense
CCCTGCGTGCTTTTACTGTATATTG 607 259 775 Antisense
TGGAACCGGATCTACTGTTGTGATA 440 547 861 Antisense
Sequence Source Affymetrix Proprietary Database