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[191733_at] testis-specific like protein

Description M05D6.2 /REP_DB=WormBase Gene ID /WP=CE03500 /TR=Q21520 /GB=CAA91410.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=testis-specific like protein
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 76      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 85      6grp_total > 76      4grp_total > 47      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 572
1 2 3 4 range
A 1034
(3)
P 		511.5
(-3)
P 		544.6
(-2.6)
P 		579.5
(-2.2)
P 		523
B 997.1
(3)
P 		528.3
(-2.3)
P 		461.9
(-3)
P 		664.8
(-0.7)
P 		535
C 893.8
(3)
P 		548.5
(-2.1)
P 		513.7
(-2.6)
P 		485
(-3)
P 		409
avr 975
(3) 		529.4
(-2.7) 		506.7
(-3) 		576.4
(-2.1) 		468

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 544
1 2 3 4 5 6 range
A 613.1
(-3)
P 		694.2
(-2)
P 		734
(-1.6)
P 		774.1
(-1.1)
P 		748.7
(-1.4)
P 		1116.9
(3)
P 		504
B 694.8
(-2.6)
P 		667.4
(-3)
P 		673.6
(-2.9)
P 		724.6
(-2.2)
P 		728.6
(-2.2)
P 		1109.3
(3)
P 		442
C 652.4
(-3)
P 		735.1
(-2)
P 		762
(-1.7)
P 		803.6
(-1.2)
P 		689.8
(-2.6)
P 		1156.9
(3)
P 		505
avr 653.4
(-3) 		698.9
(-2.4) 		723.2
(-2.1) 		767.4
(-1.6) 		722.4
(-2.1) 		1127.7
(3) 		474
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 376.5
(3)
P 		111
(-2.5)
P 		142.4
(-1.8)
P 		84.8
(-3)
P 		292
B 318
(3)
P 		130.5
(-2.3)
P 		107
(-3)
P 		141.7
(-2)
P 		211
C 295.9
(3)
P 		157.7
(-0.9)
P 		179
(-0.3)
P 		81.8
(-3)
P 		214
avr 330.1
(3) 		133.1
(-2.2) 		142.8
(-1.9) 		102.8
(-3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 301
1 2 3 4 5 6 range
A 113
(-3)
P 		246.9
(2.1)
P 		159.8
(-1.2)
P 		196.3
(0.1)
P 		225.9
(1.3)
P 		271.9
(3)
P 		159
B 241.7
(-1.1)
P 		222.2
(-1.6)
P 		163.6
(-3)
P 		191.9
(-2.3)
P 		296
(0.2)
P 		413.7
(3)
P 		250
C 241.8
(-0.9)
P 		224.3
(-1.3)
P 		193.9
(-2.1)
P 		161.6
(-3)
P 		223.2
(-1.4)
P 		387.3
(3)
P 		226
avr 198.8
(-2.1) 		231.1
(-1.1) 		172.4
(-3) 		183.3
(-2.6) 		248.4
(-0.5) 		357.6
(3) 		185
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191733_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2871
Sequence Type Exemplar sequence
Representative Public ID M05D6.2 NCBI
Target Description M05D6.2 /REP_DB=WormBase Gene ID /WP=CE03500 /TR=Q21520 /GB=CAA91410.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=testis-specific like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063386 NCBI Caenorhabditis elegans M05D6.2 (M05D6.2) mRNA, complete cds. 11/11 None
SNAP00000015525 ENSEMBL cdna:SNAP chromosome:CEL140:II:8468126:8469902:1 11/11 None
GENEFINDER00000015544 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8468234:8469902:1 11/11 None
M05D6.2 ENSEMBL cdna:known chromosome:CEL140:II:8468031:8470067:1 gene:M05D6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8468251-8469899(+) 100.0 100.0
Public Domain and Genome References
Gene Title testis-specific like protein
Ensembl M05D6.2
Entrez Gene 174353 Entrez gene
SwissProt Q21520 EMBL-EBI
WormBase CE03500 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.11810.1.S1_AT similar to CG16721-PA cfa
DROSOPHILA_2:1637739_AT dm
DROSGENOME1:154208_AT dm
CHICKEN:GGA.10057.1.S1_S_AT similar to hypothetical protein FLJ11336 gga
CHICKEN:GGAAFFX.23630.1.S1_AT similar to hypothetical protein FLJ11336 gga
HG-U95B:44244_AT t-complex 11 (mouse) like 1 hs
HU35KSUBA:W27076_AT t-complex 11 (mouse) like 1 hs
HU35KSUBB:RC_W81576_AT t-complex 11 (mouse) like 1 hs
HU35KSUBB:RC_R51067_AT t-complex 11 (mouse) like 1 hs
HG-U133A:205796_AT t-complex 11 (mouse) like 1 hs
HG-U133_PLUS_2:205796_AT t-complex 11 (mouse) like 1 hs
HG-U133A_2:205796_AT t-complex 11 (mouse) like 1 hs
HG-U133A:205797_S_AT t-complex 11 (mouse) like 1 hs
HG-U133_PLUS_2:205797_S_AT t-complex 11 (mouse) like 1 hs
HG-U133A_2:205797_S_AT t-complex 11 (mouse) like 1 hs
U133_X3P:G8922998_3P_AT t-complex 11 (mouse) like 1 hs
U133_X3P:G8922998_3P_A_AT t-complex 11 (mouse) like 1 hs
U133_X3P:HS.22383.1.S1_3P_AT t-complex 11 (mouse) like 1 hs
HG-U133_PLUS_2:233472_AT t-complex 11 (mouse) like 1 hs
HG-U133B:233472_AT t-complex 11 (mouse) like 1 hs
HG-U95AV2:35499_AT t-complex 11 (mouse) like 1 hs
HG-U95B:45862_AT t-complex 11 (mouse) like 1 hs
MG-U74CV2:131188_AT t-complex 11 like 1 mm
MG-U74CV2:134844_AT RIKEN cDNA C130096D04 gene (C130096D04Rik), mRNA mm
Protein Similarities
Method ID Description E-Value
blast CAA91410 Hypothetical protein M05D6.2 [Caenorhabditis elegans] ref|NP_495787.1| M05D6.2 [Caenorhabditis elegans] 0.0
blast CAE57638 Hypothetical protein CBG00623 [Caenorhabditis briggsae] 0.0
blast NP_001001897 putative t-complex protein 11 [Gallus gallus] gb|AAT47481.1| TCP11 [Gallus gallus] 8.0E-54
blast CAC48254 dJ85M6.3 (similar to testis-specific protein PBS13) [Homo sapiens] dbj|BAA92131.1| unnamed protein product [Homo sapiens] 1.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR008862 EMBL-EBI T-complex 11 1.0E-126
Pfam IPR008862 EMBL-EBI T-complex 11 1.0E-126
Pfam IPR008862 EMBL-EBI T-complex 11 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191733_AT
gtgcatcatctgtattcgtcacatgcaatgtagcagggaaacaaatttctgaaagtgcag
atttcaagaaaacattaaaagatcatttgattgtaatcacaaataatacagacgaagaac
gaataaaatccgatctcgagaaaatcggtgagcaatgtgtgaaagaggcagtcgacacgt
cgaagaagctgaatatcgaatggaatactgaaagctcaacatctattcgaaaccaaatca
acgcactgatcagctcagataatcctatcagaaagctggttcataccagagtttccacat
ttgttgaagaaatgctccgaagtccaacttctgttccacatcgcctacttccaggtcttt
ctgtgattcaatctgaattgtgtgctttcacatcgaaattccttcgtctctgtgtccaca
accggaagacattttacgcgatgtattccaacctcatccaggagtttcaaggacatactc
cttcgacgcatgcaatctatcgtgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCATCATCTGTATTCGTCACATG 189 481 821 Antisense
AAAGCTCAACATCTATTCGAAACCA 501 123 1031 Antisense
GGTTCATACCAGAGTTTCCACATTT 412 505 1098 Antisense
TGCTCCGAAGTCCAACTTCTGTTCC 289 581 1133 Antisense
CCTACTTCCAGGTCTTTCTGTGATT 355 269 1164 Antisense
ACATCGAAATTCCTTCGTCTCTGTG 78 107 1210 Antisense
GTCTCTGTGTCCACAACCGGAAGAC 9 471 1226 Antisense
TTTACGCGATGTATTCCAACCTCAT 292 673 1253 Antisense
ATTCCAACCTCATCCAGGAGTTTCA 467 7 1265 Antisense
CAAGGACATACTCCTTCGACGCATG 706 183 1288 Antisense
CGACGCATGCAATCTATCGTGCTGA 578 251 1304 Antisense
Sequence Source Affymetrix Proprietary Database