[Home] | [Total List]

[191732_s_at] gamma-glutamyltranspeptidase

Description C53D5.5 /REP_DB=WormBase Gene ID /WP=CE23612 /TR=Q9N5V4 /GB=AAF39787.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=gamma-glutamyltranspeptidase
Cluster 6grp_total > 32      4grp_total > 59      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 492
1 2 3 4 range
A 483.2
(0.6)
P 		680.2
(3)
P 		618.3
(2.2)
P 		188.6
(-3)
A 		492
B 477.3
(1.1)
P 		555.9
(2.3)
M 		597.7
(3)
P 		213.3
(-3)
A 		384
C 386.3
(-0.4)
A 		606.6
(3)
A 		558.7
(2.3)
P 		213.1
(-3)
A 		394
avr 448.9
(0.6) 		614.2
(3) 		591.6
(2.7) 		205
(-3) 		409

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 371
1 2 3 4 5 6 range
A 361
(1.3)
M 		409.1
(3)
P 		408.7
(3)
P 		337.9
(0.5)
P 		287.5
(-1.2)
A 		237.4
(-3)
A 		172
B 367.8
(2)
M 		363
(1.9)
P 		397.1
(3)
P 		291.8
(-0.5)
M 		261.5
(-1.5)
A 		216.7
(-3)
A 		180
C 410.6
(0.6)
P 		425.4
(0.9)
P 		557.2
(3)
P 		283.4
(-1.4)
A 		314.6
(-0.9)
P 		185.8
(-3)
A 		371
avr 379.8
(1.1) 		399.2
(1.6) 		454.3
(3) 		304.4
(-0.7) 		287.9
(-1.1) 		213.3
(-3) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 175.9
(3)
P 		147.6
(1.9)
P 		161.6
(2.4)
P 		27.6
(-3)
A 		148
B 152.2
(3)
P 		137.3
(2.2)
M 		138.5
(2.2)
P 		45.5
(-3)
A 		107
C 127.9
(0.5)
A 		174.4
(2.2)
A 		194.7
(3)
P 		35.9
(-3)
A 		159
avr 152
(2.4) 		153.1
(2.4) 		164.9
(3) 		36.3
(-3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 66.5
(-2.4)
M 		145.5
(3)
P 		89
(-0.9)
P 		85.7
(-1.1)
P 		86.8
(-1)
A 		57.8
(-3)
A 		88
B 128
(3)
M 		120.8
(2.1)
P 		96.4
(-0.7)
P 		77.3
(-3)
M 		106.2
(0.4)
A 		80.8
(-2.6)
A 		51
C 152.2
(3)
P 		129.8
(1.6)
P 		141.8
(2.3)
P 		57
(-3)
A 		101.8
(-0.2)
P 		62.2
(-2.7)
A 		95
avr 115.6
(1.5) 		132
(3) 		109.1
(0.9) 		73.3
(-2.4) 		98.3
(-0.1) 		66.9
(-3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191732_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2557
Sequence Type Exemplar sequence
Representative Public ID C53D5.5 NCBI
Target Description C53D5.5 /REP_DB=WormBase Gene ID /WP=CE23612 /TR=Q9N5V4 /GB=AAF39787.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=gamma-glutamyltranspeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058313(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058313 NCBI Caenorhabditis elegans C53D5.5 (gamma-glutamyltranspeptidase) mRNA, complete cds. 11/11 None
SNAP00000029143 ENSEMBL cdna:SNAP chromosome:CEL140:I:305901:310788:-1 11/11 None
GENEFINDER00000029147 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:305901:309809:-1 11/11 None
C53D5.5.2 ENSEMBL cdna:known chromosome:CEL140:I:305719:310803:-1 gene:C53D5.5 11/11 None
C53D5.5.1 ENSEMBL cdna:known chromosome:CEL140:I:305825:310888:-1 gene:C53D5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:305900-309764(-) 98.76 98.76
Public Domain and Genome References
Gene Title gamma-glutamyltranspeptidase
Ensembl C53D5.5
Entrez Gene 171619 Entrez gene
SwissProt Q9N5V4 EMBL-EBI
WormBase CE23612 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14399_AT gamma-glutamyltranspeptidase family protein at
ATH1-121501:252907_AT gamma-glutamyltranspeptidase family protein at
CANINE:1597727_AT similar to Gamma-glutamyltranspeptidase 1 precursor (Gamma-glutamyltransferase 1) (CD224 antigen) cfa
CANINE_2:CFAAFFX.21460.1.S1_AT similar to Gamma-glutamyltranspeptidase 1 precursor (Gamma-glutamyltransferase 1) (CD224 antigen) cfa
CANINE_2:CFAAFFX.21462.1.S1_S_AT similar to Gamma-glutamyltranspeptidase 1 precursor (Gamma-glutamyltransferase 1) (CD224 antigen) cfa
DROSOPHILA_2:1638807_S_AT dm
DROSGENOME1:152439_AT dm
CHICKEN:GGA.9387.1.S1_AT gamma-glutamyltransferase 1 gga
HG-U133_PLUS_2:211417_X_AT gamma-glutamyltransferase 1 hs
HG-U133A:211417_X_AT gamma-glutamyltransferase 1 hs
HG-U133A_2:211417_X_AT gamma-glutamyltransferase 1 hs
HG-U133_PLUS_2:208284_X_AT gamma-glutamyltransferase 1 hs
HG-U133A:208284_X_AT gamma-glutamyltransferase 1 hs
HG-U133A_2:208284_X_AT gamma-glutamyltransferase 1 hs
HG-U133_PLUS_2:209919_X_AT gamma-glutamyltransferase 1 hs
HG-U133A:209919_X_AT gamma-glutamyltransferase 1 hs
HG-U133A_2:209919_X_AT gamma-glutamyltransferase 1 hs
HG-U133_PLUS_2:207131_X_AT gamma-glutamyltransferase 1 hs
HG-U133A:207131_X_AT gamma-glutamyltransferase 1 hs
HG-U133A_2:207131_X_AT gamma-glutamyltransferase 1 hs
HU35KSUBA:L20492_S_AT gamma-glutamyltransferase 1 hs
HG-U95AV2:715_S_AT gamma-glutamyltransferase 1 hs
HC-G110:715_S_AT gamma-glutamyltransferase 1 hs
U133_X3P:G9845492_3P_S_AT gamma-glutamyltransferase 1 hs
U133_X3P:G9845490_3P_S_AT gamma-glutamyltransferase 1 hs
U133_X3P:G306754_3P_X_AT gamma-glutamyltransferase 1 hs
U133_X3P:G306754_3P_S_AT gamma-glutamyltransferase 1 hs
U133_X3P:G306752_3P_S_AT gamma-glutamyltransferase 1 hs
U133_X3P:G306748_3P_S_AT gamma-glutamyltransferase 1 hs
U133_X3P:HS.314108.0.A1_3P_S_AT gamma-glutamyltransferase 1 hs
U133_X3P:209919_3P_X_AT gamma-glutamyltransferase 1 hs
U133_X3P:207131_3P_X_AT gamma-glutamyltransferase 1 hs
U133_X3P:211417_3P_X_AT gamma-glutamyltransferase 1 hs
U133_X3P:208284_3P_X_AT gamma-glutamyltransferase 1 hs
HG-U95AV2:32893_S_AT gamma-glutamyltransferase 1 hs
HG-U95AV2:41868_AT gamma-glutamyltransferase 1 hs
U133_X3P:G9845490_3P_S_AT similar to Gamma-glutamyltranspeptidase 1 precursor (Gamma-glutamyltransferase 1) (CD224 antigen) hs
U133_X3P:G306754_3P_S_AT similar to Gamma-glutamyltranspeptidase 1 precursor (Gamma-glutamyltransferase 1) (CD224 antigen) hs
U133_X3P:G306752_3P_S_AT similar to Gamma-glutamyltranspeptidase 1 precursor (Gamma-glutamyltransferase 1) (CD224 antigen) hs
HG-U95D:76993_F_AT similar to Gamma-glutamyltranspeptidase 1 precursor (Gamma-glutamyltransferase 1) (CD224 antigen) hs
HG-U133_PLUS_2:233837_AT Gamma-glutamyltransferase 1 hs
HG-U133B:233837_AT Gamma-glutamyltransferase 1 hs
U133_X3P:HS.287505.0.S1_3P_AT Gamma-glutamyltransferase 1 hs
MU11KSUBA:U30509_S_AT gamma-glutamyltransferase 1 mm
MG-U74AV2:100085_AT gamma-glutamyltransferase 1 mm
MOE430A:1448485_AT gamma-glutamyltransferase 1 mm
MOUSE430A_2:1448485_AT gamma-glutamyltransferase 1 mm
MOUSE430_2:1448485_AT gamma-glutamyltransferase 1 mm
MU19KSUBB:TC30594_AT Gamma-glutamyltransferase 1, mRNA (cDNA clone MGC:13986 IMAGE:4037243) mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3840 gamma-glutamyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39787 Hypothetical protein C53D5.5 [Caenorhabditis elegans] ref|NP_490714.1| C53D5.5 [Caenorhabditis elegans] 0.0
blast CAE74343 Hypothetical protein CBG22061 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 1.0E-126
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.4E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.6E-7
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 1.0E-59
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490714.1 1 55-77
C53D5.5.2 1 55-77
C53D5.5.1 1 55-77
SNAP00000029143 1 55-77
GENEFINDER00000029147 3 62-84,249-271,283-305
Sequence
Target Sequence 
>C. ELEGANS:191732_S_AT
tgaagcaccaccgcaggatcatggaacaactcatgtatcgattatcgatgcagacggcaa
tgcagtttcggttacgtctaccattaacttatacctgggtgccctagtatcctccgaatc
gacgggaattctctggaataacgaaatggacgacttttccactcccggtcatccgaattt
cttcggtttcccaccgtctcccgccaatttcattcgccctggaaaacgccccatgagtag
tcaaagtccattagtgatctttaacacaaaaggggcggagcttatggcggtcggcggagc
cggtggatccaccattatttcgggtgttgctggagttgcactgcatgcgttatggctgaa
agcagatgttaaacaagctgttgatgctccaaggatgcacaatcagttacagccaaatta
cacgtggtacgagccaaacttcccgaaagcctacgtgaaatccctgatcgatcgtggtca
cgtaatgaaggcagtgaacaatttgacagttgtcaccgccgccgaacgactttccgacgg
ccaaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCACCACCGCAGGATCATGGA 140 575 1341 Antisense
GCAGTTTCGGTTACGTCTACCATTA 683 289 1402 Antisense
CCCTAGTATCCTCCGAATCGACGGG 230 255 1442 Antisense
CTCCCGGTCATCCGAATTTCTTCGG 549 231 1502 Antisense
GCCAATTTCATTCGCCCTGGAAAAC 667 275 1543 Antisense
GGAAAACGCCCCATGAGTAGTCAAA 81 527 1561 Antisense
CGGTGGATCCACCATTATTTCGGGT 287 245 1641 Antisense
GTGTTGCTGGAGTTGCACTGCATGC 542 485 1664 Antisense
GAAAGCCTACGTGAAATCCCTGATC 73 359 1785 Antisense
GAAATCCCTGATCGATCGTGGTCAC 85 363 1797 Antisense
GAACGACTTTCCGACGGCCAAATCT 165 347 1864 Antisense
Sequence Source Affymetrix Proprietary Database