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[191729_at] 7TM chemoreceptor, srj family

Description Y45G12C.14 /REP_DB=WormBase Gene ID /WP=CE21947 /GEN=srj-19 /TR=Q9N4X6 /GB=AAF60587.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 27      4grp_total > 03      6grp_cgc > 14      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 22.4
(-3)
A 		44.5
(-1.8)
A 		62.1
(-0.9)
A 		134.2
(3)
A 		112
B 53.4
(3)
A 		34.5
(0.5)
A 		8.7
(-3)
A 		33.2
(0.3)
A 		45
C 32
(-1.5)
A 		21.7
(-2.7)
A 		19.4
(-3)
A 		70.2
(3)
A 		51
avr 35.9
(-2.3) 		33.6
(-2.6) 		30.1
(-3) 		79.2
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 101.3
(3)
A 		7.7
(-3)
A 		12.2
(-2.7)
A 		45.3
(-0.6)
A 		26.9
(-1.8)
A 		63.4
(0.6)
A 		94
B 36.5
(0.8)
A 		52.2
(3)
A 		52.2
(3)
A 		9.6
(-3)
A 		17.6
(-1.9)
A 		30.8
(-0)
A 		43
C 37.1
(-0.4)
A 		77.2
(3)
A 		6.2
(-3)
A 		51.3
(0.8)
A 		36.5
(-0.4)
A 		13.5
(-2.4)
A 		71
avr 58.3
(3) 		45.7
(0.8) 		23.5
(-3) 		35.4
(-0.9) 		27
(-2.4) 		35.9
(-0.9) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 8.2
(-3)
A 		9.6
(-2.3)
A 		16.2
(1.2)
A 		19.6
(3)
A 		11
B 17
(3)
A 		8.5
(-0.4)
A 		2
(-3)
A 		7.1
(-1)
A 		15
C 10.6
(1.7)
A 		6.2
(-3)
A 		6.8
(-2.4)
A 		11.8
(3)
A 		6
avr 11.9
(1.9) 		8.1
(-3) 		8.3
(-2.7) 		12.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 18.7
(3)
A 		2.7
(-3)
A 		2.7
(-3)
A 		11.5
(0.3)
A 		8.1
(-1)
A 		15.4
(1.8)
A 		16
B 12.7
(1.1)
A 		17.4
(3)
A 		12.7
(1.1)
A 		2.5
(-3)
A 		7.1
(-1.1)
A 		11.5
(0.6)
A 		15
C 13.8
(0.3)
A 		23.6
(3)
A 		1.6
(-3)
A 		10.3
(-0.6)
A 		11.8
(-0.2)
A 		4.5
(-2.2)
A 		22
avr 15.1
(3) 		14.6
(2.7) 		5.7
(-3) 		8.1
(-1.5) 		9
(-0.9) 		10.5
(0.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191729_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14837
Sequence Type Exemplar sequence
Representative Public ID Y45G12C.14 NCBI
Target Description Y45G12C.14 /REP_DB=WormBase Gene ID /WP=CE21947 /GEN=srj-19 /TR=Q9N4X6 /GB=AAF60587.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071302(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071302 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-19) (srj-19) mRNA, complete cds. 11/11 None
SNAP00000043318 ENSEMBL cdna:SNAP chromosome:CEL140:V:2561616:2570571:-1 11/11 None
GENEFINDER00000043330 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2568750:2570633:-1 9/11 None
Y45G12C.14 ENSEMBL cdna:known chromosome:CEL140:V:2568704:2570571:-1 gene:Y45G12C.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2568703-2570571(-) 98.62 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
Gene Symbol srj-19
Ensembl Y45G12C.14
Entrez Gene 191939 Entrez gene
SwissProt Q9N4X6 EMBL-EBI
WormBase CE21947 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T19600 probable transposition protein C31A11.2 - Caenorhabditis elegans 0.0
blast AAC48046 Hypothetical protein K09E10.3 [Caenorhabditis elegans] 0.0
blast T19555 hypothetical protein C29E6.6 - Caenorhabditis elegans 0.0
blast NP_503703 Serpentine Receptor, class J family member (srj-19) [Caenorhabditis elegans] gb|AAF60587.1| Serpentine receptor, class j protein 19 [Caenorhabditis elegans] 1.0E-177
blast NP_503704 Serpentine Receptor, class J family member (srj-20) [Caenorhabditis elegans] gb|AAF60588.2| Serpentine receptor, class j protein 20 [Caenorhabditis elegans] 1.0E-147
blast CAE62519 Hypothetical protein CBG06624 [Caenorhabditis briggsae] 1.0E-129
blast NP_503703 Serpentine Receptor, class J family member (srj-19) [Caenorhabditis elegans] gb|AAF60587.1| Serpentine receptor, class j protein 19 [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 2.8E-41
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503703.1 7 15-37,46-68,88-110,123-145,198-220,241-263,278-300
Y45G12C.14 7 15-37,46-68,88-110,123-145,198-220,241-263,278-300
SNAP00000043318 7 7-29,44-63,70-92,107-129,205-227,257-279,286-308
GENEFINDER00000043330 5 40-62,77-99,112-134,187-209,230-249
Sequence
Target Sequence 
>C. ELEGANS:191729_AT
gtcagttatctatgtcctatttcacatgtcaatctgggcaatgatagactatttctgctt
gcactcggctccggagatgagggattatattcggatcccgttcagaaaactgcataatga
gagcatagacaacattaattttgtcgctggattgttttcggaagcatccccagacattgt
gcaacgatcgtgggctgggatcgtgttgttgactatgatagcgagctactcgatgatact
ttattttgtcttgggatacaagatcataactggcctgcacatagaatcagtgacgatgag
ccaacaaactgctcaaatgcaaaaacaacttttcaaagcgctgaccatccagacaatcat
tcccatttgcgtgagcttcatgccttgctctttcagtttctatggagccgcttttaacat
cggatttatgaactgggtgtactgggtctctgctgtcgccgtatcaatgttcccattttt
ggacccgctcgcaataattctactgctcccggctttacgtcgacgctctccgagagcgtc
gacgtctccgagactccgtttggaaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAGTTATCTATGTCCTATTTCAC 173 467 405 Antisense
TGCACTCGGCTCCGGAGATGAGGGA 537 577 464 Antisense
ATTCGGATCCCGTTCAGAAAACTGC 583 9 493 Antisense
GAAGCATCCCCAGACATTGTGCAAC 629 341 565 Antisense
GCGAGCTACTCGATGATACTTTATT 70 291 625 Antisense
AACTTTTCAAAGCGCTGACCATCCA 504 117 731 Antisense
TGACCATCCAGACAATCATTCCCAT 635 569 746 Antisense
AATCATTCCCATTTGCGTGAGCTTC 63 171 759 Antisense
TCTTTCAGTTTCTATGGAGCCGCTT 560 615 793 Antisense
GACCCGCTCGCAATAATTCTACTGC 13 383 886 Antisense
GTCTCCGAGACTCCGTTTGGAAAAG 246 471 948 Antisense
Sequence Source Affymetrix Proprietary Database