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[191725_s_at] Sugar (and other) transporter

Description K11D9.3 /REP_DB=WormBase Gene ID /WP=CE20002 /TR=Q9XTG8 /GB=CAB07265.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Sugar (and other) transporter
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 84      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 75      6grp_total > 75      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 794
1 2 3 4 range
A 1221.7
(3)
P 		647.7
(-3)
P 		695.2
(-2.5)
P 		1103.4
(1.8)
P 		574
B 1312.4
(3)
P 		678.5
(-2.3)
P 		598
(-3)
P 		1162.5
(1.7)
P 		714
C 1273.4
(3)
P 		518.6
(-3)
P 		542.4
(-2.8)
P 		1244.7
(2.8)
P 		755
avr 1269.2
(3) 		614.9
(-3) 		611.9
(-3) 		1170.2
(2.1) 		657

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 467
1 2 3 4 5 6 range
A 859.6
(-0.8)
P 		716.1
(-3)
P 		886.4
(-0.4)
P 		1106
(3)
P 		883.6
(-0.4)
P 		1078.7
(2.6)
P 		390
B 783.4
(-1.9)
P 		723.9
(-3)
P 		817.9
(-1.2)
P 		943.1
(1.2)
P 		851.8
(-0.6)
P 		1040.1
(3)
P 		316
C 723.6
(-3)
P 		762.8
(-2.5)
P 		1019.7
(0.9)
P 		1182.7
(3)
P 		789.1
(-2.1)
P 		1092.9
(1.8)
P 		459
avr 788.9
(-2) 		734.3
(-3) 		908
(0) 		1077.3
(3) 		841.5
(-1.1) 		1070.6
(2.9) 		343
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 444.8
(3)
P 		140.6
(-3)
P 		181.7
(-2.2)
P 		161.5
(-2.6)
P 		304
B 418.5
(3)
P 		167.6
(-2.4)
P 		138.6
(-3)
P 		247.7
(-0.7)
P 		280
C 421.5
(3)
P 		149.1
(-3)
P 		189
(-2.1)
P 		209.9
(-1.7)
P 		272
avr 428.3
(3) 		152.4
(-3) 		169.8
(-2.6) 		206.4
(-1.8) 		276

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 158.5
(-3)
P 		254.7
(1.7)
P 		193
(-1.3)
P 		280.5
(3)
P 		266.6
(2.3)
P 		262.6
(2.1)
P 		122
B 272.6
(-0.7)
P 		241
(-1.7)
P 		198.6
(-3)
P 		249.8
(-1.4)
P 		346.1
(1.7)
P 		387.8
(3)
P 		189
C 268.2
(-1.4)
P 		232.8
(-3)
P 		259.5
(-1.8)
P 		237.8
(-2.8)
P 		255.4
(-2)
P 		365.8
(3)
P 		133
avr 233.1
(-2.2) 		242.8
(-1.7) 		217
(-3) 		256
(-1.1) 		289.4
(0.6) 		338.7
(3) 		122
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191725_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6987
Sequence Type Exemplar sequence
Representative Public ID K11D9.3 NCBI
Target Description K11D9.3 /REP_DB=WormBase Gene ID /WP=CE20002 /TR=Q9XTG8 /GB=CAB07265.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Sugar (and other) transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066981(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066981 NCBI Caenorhabditis elegans K11D9.3 (K11D9.3) mRNA, complete cds. 11/11 None
K11D9.3.2 ENSEMBL cdna:known chromosome:CEL140:III:10796588:10800984:-1 gene:K11D9.3 11/11 None
K11D9.3.1 ENSEMBL cdna:known chromosome:CEL140:III:10796588:10800976:-1 gene:K11D9.3 11/11 None
K11D9.3.3 ENSEMBL cdna:known chromosome:CEL140:III:10796588:10802089:-1 gene:K11D9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10796778-10800971(-) 100.0 100.0
Public Domain and Genome References
Gene Title Sugar (and other) transporter
Ensembl K11D9.3
Entrez Gene 176510 Entrez gene
SwissProt Q9XTG8 EMBL-EBI
WormBase CE20002 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07265 Hypothetical protein K11D9.3 [Caenorhabditis elegans] emb|CAA16342.1| Hypothetical protein K11D9.3 [Caenorhabditis elegans] ref|NP_499382.1| K11D9.3 [Caenorhabditis elegans] 0.0
blast CAE71400 Hypothetical protein CBG18308 [Caenorhabditis briggsae] 0.0
blast CAE61870 Hypothetical protein CBG05850 [Caenorhabditis briggsae] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 1.9E-8
Pfam IPR005828 EMBL-EBI General substrate transporter 4.1E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499382.1 10 7-29,87-106,113-135,139-161,174-191,195-217,270-292,307-324,345-367,425-447
K11D9.3.2 10 7-29,87-106,113-135,139-161,174-191,195-217,270-292,307-324,345-367,425-447
K11D9.3.1 10 7-29,87-106,113-135,139-161,174-191,195-217,270-292,307-324,345-367,425-447
K11D9.3.3 10 7-29,87-106,113-135,139-161,174-191,195-217,270-292,307-324,345-367,425-447
Sequence
Target Sequence 
>C. ELEGANS:191725_S_AT
atatctggtgatctcttcgtcaatcagattcttttctcaattcttatcgcggtttccaag
atgattctcgtcgtatttgacactcatgttccatcattccgtcgacgaactcttcatcaa
ggtgcacagttggttgtgtgcatatgcttcttgattcttaccttcatgacgtttaatgga
tatactggtctcgcattcctgattgtcaatctaatcggaacagtcttcatcgagtacacc
tgggatgcgtgctatctttgtgccgtcgagagtatggaaaccgcgtgccgagcatctgca
actggaacctgttcacttgttgccagaatcggagcaattctcgcgccaatgctgaactac
gcaaacctttggtggccaccatccgtgtacctgaccgtcgtactccttggaacaatcaat
ttgataatctcatacttcttcttggttgaaacgaagaatgtaaacctcgacaatgtgcac
atcgatccatcatccgaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCTGGTGATCTCTTCGTCAATC 244 21 907 Antisense
TTTGACACTCATGTTCCATCATTCC 574 667 982 Antisense
GCATATGCTTCTTGATTCTTACCTT 304 309 1046 Antisense
GTCTCGCATTCCTGATTGTCAATCT 371 471 1094 Antisense
GGAACAGTCTTCATCGAGTACACCT 456 529 1123 Antisense
GTACACCTGGGATGCGTGCTATCTT 642 459 1140 Antisense
GTGCCGAGCATCTGCAACTGGAACC 352 477 1191 Antisense
TGGAACCTGTTCACTTGTTGCCAGA 361 547 1209 Antisense
GACCGTCGTACTCCTTGGAACAATC 327 381 1299 Antisense
GATAATCTCATACTTCTTCTTGGTT 111 423 1329 Antisense
TGCACATCGATCCATCATCCGAAGA 640 577 1382 Antisense
Sequence Source Affymetrix Proprietary Database