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[191722_at] C4-type zinc finger protein

Description C03G6.10 /REP_DB=WormBase Gene ID /WP=CE07884 /TR=O01446 /GB=AAB52310.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=C4-type zinc finger protein
Cluster 6grp_total > 25      4grp_total > 60      6grp_cgc > 24      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 138.3
(1.9)
P 		158
(3)
P 		99.7
(-0.1)
P 		45.9
(-3)
A 		112
B 123.9
(1)
P 		115.2
(0.4)
P 		152.6
(3)
P 		67.1
(-3)
A 		86
C 142.3
(2.6)
P 		129
(1.2)
P 		146.4
(3)
P 		88.1
(-3)
M 		58
avr 134.8
(3) 		134.1
(2.9) 		132.9
(2.8) 		67
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 190.9
(3)
P 		130
(0.3)
P 		90
(-1.6)
P 		57.9
(-3)
A 		95.5
(-1.3)
A 		86.5
(-1.7)
P 		133
B 153.2
(2.7)
P 		159.8
(3)
P 		113.2
(0.6)
A 		95.4
(-0.3)
A 		42.3
(-3)
A 		72.9
(-1.4)
P 		118
C 128.7
(1.6)
P 		156.6
(3)
P 		98.2
(0.2)
P 		139.9
(2.2)
P 		32.8
(-3)
A 		75.1
(-0.9)
A 		124
avr 157.6
(3) 		148.8
(2.5) 		100.5
(-0.4) 		97.7
(-0.6) 		56.9
(-3) 		78.2
(-1.7) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 50.3
(3)
P 		34.3
(0.8)
P 		26.1
(-0.3)
P 		6.7
(-3)
A 		44
B 39.5
(3)
P 		28.5
(0.4)
P 		35.4
(2)
P 		14.3
(-3)
A 		25
C 47.1
(2.4)
P 		37.1
(0.7)
P 		51
(3)
P 		14.9
(-3)
M 		36
avr 45.6
(3) 		33.3
(0.8) 		37.5
(1.6) 		12
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 35.2
(0.9)
P 		46.3
(3)
P 		19.6
(-2.1)
P 		14.7
(-3)
A 		28.8
(-0.3)
A 		21.1
(-1.8)
P 		32
B 53.3
(3)
P 		53.2
(3)
P 		27.5
(-1.3)
A 		25.3
(-1.7)
A 		17.2
(-3)
A 		27.2
(-1.3)
P 		36
C 47.7
(3)
P 		47.8
(3)
P 		25
(-0.7)
P 		28.1
(-0.2)
P 		10.6
(-3)
A 		25.2
(-0.6)
A 		37
avr 45.4
(2.3) 		49.1
(3) 		24
(-2) 		22.7
(-2.2) 		18.9
(-3) 		24.5
(-1.9) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191722_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11825
Sequence Type Exemplar sequence
Representative Public ID C03G6.10 NCBI
Target Description C03G6.10 /REP_DB=WormBase Gene ID /WP=CE07884 /TR=O01446 /GB=AAB52310.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=C4-type zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072470(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072470 NCBI Caenorhabditis elegans C03G6.10 (C03G6.10) mRNA, complete cds. 11/11 None
GENEFINDER00000031576 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7344781:7346389:1 11/11 None
C03G6.10 ENSEMBL cdna:known chromosome:CEL140:V:7344781:7346389:1 gene:C03G6.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031547 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7344781-7346390(+) 100.0 100.0
Public Domain and Genome References
Gene Title C4-type zinc finger protein
Gene Symbol nhr-148
Ensembl C03G6.10
Entrez Gene 182172 Entrez gene
SwissProt O01446 EMBL-EBI
WormBase CE07884 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52310 Hypothetical protein C03G6.10 [Caenorhabditis elegans] ref|NP_504871.1| C03G6.10 [Caenorhabditis elegans] 0.0
blast AAB52308 Hypothetical protein C03G6.8 [Caenorhabditis elegans] ref|NP_504873.1| C03G6.8 [Caenorhabditis elegans] 3.0E-96
blast AAB52312 Hypothetical protein C03G6.12 [Caenorhabditis elegans] ref|NP_504874.1| C03G6.12 [Caenorhabditis elegans] 7.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 5.3E-43
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.9E-9
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.1E-8
Sequence
Target Sequence 
>C. ELEGANS:191722_AT
aaatctggactctttgtaacctcctcacaactgtagaatatctcaagacgttcaattatt
tcaaggatctctctgctttagacaaactcattcttgctcgacatgttatattgattggga
aaaacctgcatatatcaaactactcgttttcaaaaaaatttacgggttgtttgaacatag
aaaccgacgcccaaagagagcgtcattatccagtggcatttatgttaatggcaccactta
ttcgatcacaaattcaacctatagagtacattcttctcaaggctatttgctgctgtaatc
cagccgttccaaatttgtctcaaaaagcccaaagtacattagccagagaacgtgggcagt
ttgtgagcatactttttgattattgccaacgatctggaaaaaatggaccaggacgttttg
cagaactcatcggaatattttcagttatggagaaacaacaaagaatgcaaaaagacatgt
atatgctttactttgcgcctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTGGACTCTTTGTAACCTCCT 671 113 566 Antisense
GTAACCTCCTCACAACTGTAGAATA 523 459 581 Antisense
GGATCTCTCTGCTTTAGACAAACTC 48 513 630 Antisense
AGACAAACTCATTCTTGCTCGACAT 445 71 645 Antisense
AACCTGCATATATCAAACTACTCGT 374 147 688 Antisense
GAGAGCGTCATTATCCAGTGGCATT 280 395 761 Antisense
ATGGCACCACTTATTCGATCACAAA 189 53 793 Antisense
CAAGGCTATTTGCTGCTGTAATCCA 542 183 843 Antisense
TAATCCAGCCGTTCCAAATTTGTCT 132 637 861 Antisense
GGACCAGGACGTTTTGCAGAACTCA 126 523 970 Antisense
TGTATATGCTTTACTTTGCGCCTCA 313 561 1043 Antisense
Sequence Source Affymetrix Proprietary Database