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[191721_at] homeobox protein

Description D1007.1 /REP_DB=WormBase Gene ID /WP=CE09036 /GEN=ceh-17 /TR=O01874 /GB=AAK18908.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=homeobox protein
Cluster 4grp_high_8_8 > 35      6grp_total > 06      4grp_total > 44      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 103
(-0.3)
P 		135.9
(3)
P 		75.3
(-3)
A 		93.6
(-1.2)
A 		61
B 157.8
(2.5)
P 		168.9
(3)
P 		34.9
(-3)
A 		68.2
(-1.5)
A 		134
C 143.4
(3)
P 		114.5
(-0.1)
P 		92.8
(-2.5)
P 		87.9
(-3)
P 		56
avr 134.7
(2.6) 		139.8
(3) 		67.7
(-3) 		83.2
(-1.7) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 151.5
(3)
P 		113.1
(1.3)
P 		101.2
(0.8)
P 		11.9
(-3)
A 		50
(-1.4)
A 		43.4
(-1.6)
A 		140
B 178.5
(3)
P 		99.7
(0)
P 		90.2
(-0.4)
P 		87.5
(-0.5)
A 		62.4
(-1.4)
A 		20.4
(-3)
A 		158
C 196.3
(3)
P 		100.9
(-0)
P 		71.8
(-1)
A 		13.8
(-2.8)
A 		47.1
(-1.7)
A 		7.4
(-3)
A 		189
avr 175.4
(3) 		104.6
(0.2) 		87.7
(-0.5) 		37.7
(-2.4) 		53.2
(-1.8) 		23.7
(-3) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 37.5
(3)
P 		29.5
(1)
P 		19.7
(-1.5)
A 		13.7
(-3)
A 		24
B 50.3
(3)
P 		41.7
(1.8)
P 		8.1
(-3)
A 		14.5
(-2.1)
A 		42
C 47.5
(3)
P 		32.9
(0.3)
P 		32.4
(0.2)
P 		14.8
(-3)
P 		33
avr 45.1
(3) 		34.7
(1) 		20.1
(-1.9) 		14.3
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 27.9
(1)
P 		40.2
(3)
P 		22
(0.1)
P 		3
(-3)
A 		15.1
(-1)
A 		10.6
(-1.8)
A 		37
B 62.1
(3)
P 		33.2
(-0.2)
P 		21.9
(-1.4)
P 		23.2
(-1.3)
A 		25.4
(-1)
A 		7.6
(-3)
A 		55
C 72.8
(3)
P 		30.8
(-0.6)
P 		18.3
(-1.7)
A 		2.8
(-3)
A 		15.2
(-1.9)
A 		2.5
(-3)
A 		70
avr 54.3
(3) 		34.7
(0.5) 		20.7
(-1.3) 		9.7
(-2.6) 		18.6
(-1.5) 		6.9
(-3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191721_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1148
Sequence Type Exemplar sequence
Representative Public ID D1007.1 NCBI
Target Description D1007.1 /REP_DB=WormBase Gene ID /WP=CE09036 /GEN=ceh-17 /TR=O01874 /GB=AAK18908.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=homeobox protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058992(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058992 NCBI Caenorhabditis elegans C.Elegans Homeobox family member (ceh-17) (ceh-17) mRNA, complete cds. 11/11 None
SNAP00000011276 ENSEMBL cdna:SNAP chromosome:CEL140:I:4568963:4570025:-1 11/11 None
GENEFINDER00000011304 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4568963:4570025:-1 11/11 None
D1007.1 ENSEMBL cdna:known chromosome:CEL140:I:4568963:4570028:-1 gene:D1007.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4568962-4570025(-) 100.0 100.0
Public Domain and Genome References
Gene Title homeobox protein
Gene Symbol ceh-17
Ensembl D1007.1
Entrez Gene 172059 Entrez gene
SwissProt O01874 EMBL-EBI
WormBase CE09036 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity traceable author statement QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18908 C.elegans homeobox protein 17 [Caenorhabditis elegans] ref|NP_491393.1| C.Elegans Homeobox family member (ceh-17) [Caenorhabditis elegans] gb|AAF76229.1| CEH-17 [Caenorhabditis elegans] 1.0E-109
blast CAE74525 Hypothetical protein CBG22279 [Caenorhabditis briggsae] 1.0E-91
blast NP_005160 paired-like homeobox 2a [Homo sapiens] gb|AAH41564.1| Paired-like homeobox 2a [Homo sapiens] sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A (Paired-like homeobox 2A) (Aristaless homeobox protein homolog) (ARIX1 homeodomain protein) 5.0E-26
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 6.99999984096753E-24
Pfam IPR001356 EMBL-EBI Homeobox 4.7E-32
Sequence
Target Sequence 
>C. ELEGANS:191721_AT
tcatttttctatacaccacagtcacataatatttatcaccaatatgcaactccgtatcta
caaagtggacgtgccttgacaactgctcacaatacttcaagctcttcagcgggcaattcc
acatcttcatcatcttcctcatcaaactaccgtaatacaacacacgattcactacaagct
ttttttaatactggtctacaatatcagttgtatcaaaaatcacaattaattggaagtgat
acgattcagaggacaagtagcaatgttttgaacggactgccaagaagttctcttgttggt
gctctctgctcaaccggtggagctcctttgaaccctgccgagcgtcgaaaacaacgccga
atccgtaccacattcacatcaggacaactgaaggagttggaaagatcattctgtgaaact
cattatccagatatttatacacgagaagaaattgcaatgagaattgatttaactgaagcc
cgagttcaagtgtggtttcagaatcggcgggcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTTTTCTATACACCACAGTCAC 699 619 106 Antisense
AATATGCAACTCCGTATCTACAAAG 572 171 146 Antisense
CAAAGTGGACGTGCCTTGACAACTG 380 191 166 Antisense
GCCTTGACAACTGCTCACAATACTT 665 279 178 Antisense
TCAAGCTCTTCAGCGGGCAATTCCA 270 631 202 Antisense
TCTTCCTCATCAAACTACCGTAATA 697 615 238 Antisense
AACACACGATTCACTACAAGCTTTT 447 135 264 Antisense
AAGAAGTTCTCTTGTTGGTGCTCTC 257 153 387 Antisense
ATCCGTACCACATTCACATCAGGAC 212 39 466 Antisense
GAAGCCCGAGTTCAAGTGTGGTTTC 449 343 580 Antisense
TGTGGTTTCAGAATCGGCGGGCGAA 605 553 596 Antisense
Sequence Source Affymetrix Proprietary Database