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[191718_s_at] intermediate filament protein

Description C43C3.1 /REP_DB=WormBase Gene ID /WP=CE01523 /TR=Q09501 /GB=CAA87328.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=intermediate filament protein
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 04      4grp_highest_8_8 > 41      4grp_high_8_8 > 50      6grp_highest_nonorm > 12      6grp_total > 14      4grp_total > 53      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4803
1 2 3 4 range
A 4355.5
(3)
P 		2681.1
(0.6)
P 		3078.8
(1.2)
P 		181.4
(-3)
P 		4174
B 4984.8
(3)
P 		2739.7
(0.2)
P 		2705.6
(0.1)
P 		199.7
(-3)
P 		4785
C 4347.3
(3)
P 		2649.7
(0.5)
P 		2611.8
(0.5)
P 		200.2
(-3)
P 		4147
avr 4562.5
(3) 		2690.2
(0.4) 		2798.7
(0.6) 		193.8
(-3) 		4369

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2780
1 2 3 4 5 6 range
A 3555.4
(3)
P 		2949.9
(1.5)
P 		1588.5
(-1.8)
P 		1601.2
(-1.8)
P 		1290.5
(-2.6)
P 		1119
(-3)
P 		2436
B 3163.8
(3)
P 		2551.7
(1.5)
P 		2001.5
(0.1)
P 		1625.3
(-0.9)
P 		1139.8
(-2.1)
P 		775.8
(-3)
P 		2388
C 3127.6
(3)
P 		2599.1
(1.5)
P 		2177.3
(0.3)
P 		1943.7
(-0.3)
P 		1164.7
(-2.5)
P 		1000.2
(-3)
P 		2127
avr 3282.3
(3) 		2700.2
(1.5) 		1922.4
(-0.5) 		1723.4
(-1) 		1198.3
(-2.4) 		965
(-3) 		2317
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1563
1 2 3 4 range
A 1585.8
(3)
P 		582
(-0.9)
P 		804.8
(-0)
P 		26.6
(-3)
P 		1559
B 1589.6
(3)
P 		676.6
(-0.5)
P 		627
(-0.7)
P 		42.6
(-3)
P 		1547
C 1439.1
(3)
P 		761.8
(0.1)
P 		910.3
(0.7)
P 		33.8
(-3)
P 		1405
avr 1538.2
(3) 		673.5
(-0.4) 		780.7
(-0) 		34.3
(-3) 		1504

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 887
1 2 3 4 5 6 range
A 655.4
(-0)
P 		1049.1
(3)
P 		346
(-2.4)
P 		406.1
(-2)
P 		389.4
(-2.1)
P 		272.4
(-3)
P 		777
B 1100.9
(3)
P 		849.3
(1.1)
P 		486
(-1.5)
P 		430.5
(-2)
P 		463.1
(-1.7)
P 		289.3
(-3)
P 		812
C 1159.3
(3)
P 		793.1
(0.3)
P 		554.2
(-1.4)
P 		390.9
(-2.6)
P 		376.9
(-2.7)
P 		334.8
(-3)
P 		825
avr 971.9
(3) 		897.2
(2.3) 		462.1
(-1.5) 		409.2
(-2) 		409.8
(-2) 		298.8
(-3) 		673
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191718_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16103
Sequence Type Exemplar sequence
Representative Public ID C43C3.1 NCBI
Target Description C43C3.1 /REP_DB=WormBase Gene ID /WP=CE01523 /TR=Q09501 /GB=CAA87328.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=intermediate filament protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077227(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077227 NCBI Caenorhabditis elegans Intermediate Filament Protein, class E family member (ifp-1) (ifp-1) mRNA, complete cds. 11/11 None
SNAP00000031845 ENSEMBL cdna:SNAP chromosome:CEL140:X:9676023:9680097:-1 11/11 None
GENEFINDER00000031849 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9676023:9680097:-1 11/11 None
C43C3.1 ENSEMBL cdna:known chromosome:CEL140:X:9675775:9680100:-1 gene:C43C3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9676022-9680097(-) 100.0 100.0
Public Domain and Genome References
Gene Title intermediate filament protein
Gene Symbol ifp-1
Ensembl C43C3.1
Entrez Gene 181182 Entrez gene
SwissProt Q09501 EMBL-EBI
WormBase CE01523 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87328 Hypothetical protein C43C3.1 [Caenorhabditis elegans] ref|NP_509628.1| Intermediate Filament Protein, class E family member (ifp-1) [Caenorhabditis elegans] sp|Q09501|IFP1_CAEEL Intermediate filament protein ifp-1 (Intermediate filament protein E1) (IF-E1) (Cel IF E1) 0.0
blast CAE69773 Hypothetical protein CBG16055 [Caenorhabditis briggsae] 0.0
blast CAE69772 Hypothetical protein CBG16054 [Caenorhabditis briggsae] 1.0E-148
Sequence
Target Sequence 
>C. ELEGANS:191718_S_AT
ttaatgaacgtgctcccggttacactcatattaatagcaacttcccgctaattacgccag
tgactgaaggagctactgtcccctcatactacgatacttttaatcggaactcgagccaaa
gagggccacatcattcgagctatcatgcagcaacaggctcagtgagcaatagcatctcca
ctactctactcaatgaaggatcaattgaacatagcagtagttccgatagtgttgacgagg
acaacttccagagattcactagatggtacaaggggagagtgaagatttcggatgtgactg
cagattttgttcaacttgtaaatagaagctcgaaaaaatcggcagacgttggtggcttca
aacttattcacgagtttggaaacaagagcgtatatgttgatcttccagttggattgatcc
ttgcacccaaggatagcttgaagatctacgctcgtggagcaactcatgaaagaggagcag
ttattgctgaaattgacttcttcgataccaccatccataccaatacatcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATGAACGTGCTCCCGGTTACAC 693 673 1727 Antisense
TCCCGCTAATTACGCCAGTGACTGA 410 597 1769 Antisense
TGACTGAAGGAGCTACTGTCCCCTC 615 569 1787 Antisense
TCCCCTCATACTACGATACTTTTAA 194 597 1805 Antisense
AAGAGGGCCACATCATTCGAGCTAT 128 155 1845 Antisense
ATCTCCACTACTCTACTCAATGAAG 502 31 1900 Antisense
AAATCGGCAGACGTTGGTGGCTTCA 368 117 2062 Antisense
GAGCGTATATGTTGATCTTCCAGTT 302 387 2112 Antisense
AGTTGGATTGATCCTTGCACCCAAG 540 65 2133 Antisense
AAATTGACTTCTTCGATACCACCAT 464 115 2216 Antisense
CCACCATCCATACCAATACATCAAT 6 275 2234 Antisense
Sequence Source Affymetrix Proprietary Database