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[191711_at] protein-tyrosine phosphatase

Description F36H1.3 /REP_DB=WormBase Gene ID /WP=CE05815 /TR=Q20108 /GB=CAA92995.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 39      4grp_total > 34      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 37.3
(-3)
A 		106
(3)
A 		48.6
(-2)
A 		86.4
(1.3)
A 		69
B 53.7
(0.3)
A 		22.7
(-3)
A 		76.4
(2.6)
A 		79.8
(3)
A 		57
C 78
(-1.6)
A 		150
(3)
A 		56.1
(-3)
A 		94.9
(-0.5)
A 		94
avr 56.3
(-3) 		92.9
(3) 		60.4
(-2.3) 		87
(2) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 125
(1)
A 		68.6
(-2.8)
A 		65.8
(-3)
A 		86.9
(-1.6)
A 		154.4
(3)
A 		76.4
(-2.3)
A 		89
B 117.5
(3)
A 		83.3
(-3)
A 		89.8
(-1.9)
A 		94.7
(-1)
A 		89.4
(-1.9)
M 		98.7
(-0.3)
A 		34
C 33
(-3)
A 		102.4
(3)
A 		63.9
(-0.3)
A 		50.5
(-1.5)
A 		59.8
(-0.7)
A 		102.7
(3)
P 		70
avr 91.8
(1) 		84.8
(-0.5) 		73.2
(-3) 		77.4
(-2.1) 		101.2
(3) 		92.6
(1.2) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 13.6
(-2.5)
A 		23
(3)
A 		12.7
(-3)
A 		12.7
(-3)
A 		10
B 17.1
(2.7)
A 		5.6
(-3)
A 		17.7
(3)
A 		17
(2.7)
A 		12
C 25.8
(-0.8)
A 		43.1
(3)
A 		19.5
(-2.2)
A 		16
(-3)
A 		27
avr 18.8
(-0.5) 		23.9
(3) 		16.6
(-2) 		15.2
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 23
(-1.4)
A 		24.4
(-1.1)
A 		14.3
(-3)
A 		22
(-1.6)
A 		46.6
(3)
A 		18.6
(-2.2)
A 		32
B 40.9
(3)
A 		27.7
(-1.1)
A 		21.8
(-3)
A 		25.1
(-2)
A 		36.3
(1.6)
M 		36.8
(1.7)
A 		19
C 12.2
(-2.5)
A 		31.2
(2.2)
A 		16.3
(-1.5)
A 		10.2
(-3)
A 		19.3
(-0.7)
A 		34.4
(3)
P 		24
avr 25.4
(-0.1) 		27.8
(0.7) 		17.5
(-3) 		19.1
(-2.4) 		34.1
(3) 		29.9
(1.5) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191711_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9384
Sequence Type Exemplar sequence
Representative Public ID F36H1.3 NCBI
Target Description F36H1.3 /REP_DB=WormBase Gene ID /WP=CE05815 /TR=Q20108 /GB=CAA92995.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069657 NCBI Caenorhabditis elegans F36H1.3 (F36H1.3) mRNA, complete cds. 11/11 None
SNAP00000039961 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11050557:11052402:1 10/11 None
GENEFINDER00000039965 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11049742:11052402:1 10/11 None
F36H1.3 ENSEMBL cdna:known chromosome:CEL140:IV:11049571:11052422:1 gene:F36H1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11049576-11052428(+) 92.92 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl F36H1.3
Entrez Gene 185379 Entrez gene
SwissProt Q20108 EMBL-EBI
WormBase CE05815 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92995 Hypothetical protein F36H1.3 [Caenorhabditis elegans] ref|NP_502058.1| F36H1.3 [Caenorhabditis elegans] 0.0
blast CAH04747 Hypothetical protein R09E10.9 [Caenorhabditis elegans] ref|NP_001023335.1| R09E10.9 [Caenorhabditis elegans] 1.0E-155
blast CAE72543 Hypothetical protein CBG19727 [Caenorhabditis briggsae] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-96
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-96
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-96
Sequence
Target Sequence 
>C. ELEGANS:191711_AT
ggtgctcaatgccttctaaatgggaaagccttccgaccggctgatttagtgagagctgtc
agacattgtcgcttgaacagtgttcaaatggacacacagtatctgatgttagtcgaggca
attctggatttgggagtggcgttcaagtatattgaagatccgaaatcacttgacgctatt
gaaacctacaaaagaaatgttgcagactatgttgaagctcatccgcctccgctcgaaatg
ttcaaggcaccgccaaaagttgaaattgagaaagaaaaggaaaaagacaaggacgaagat
gatggagcacaaccatcttctgctcctgtccacactccaccagctcctccagcaattcca
agtccagcaaagcttccaactgccccacctcctgtggagaaaccagttactccatctcca
agtgcatcccctcttccatccccagtttcttcacctgctccacaacttgtccaaaagcca
accacccctactgatgcatctaaaccttttgttgctcaaccaccatttgctccaaatctg
ggtgcacagaccggaatggtatcaacagccttccaacttcaatatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCTCAATGCCTTCTAAATGGGA 102 501 1180 Antisense
GCCTTCCGACCGGCTGATTTAGTGA 664 273 1207 Antisense
GAAGATCCGAAATCACTTGACGCTA 697 335 1333 Antisense
GATGGAGCACAACCATCTTCTGCTC 516 407 1480 Antisense
GCAATTCCAAGTCCAGCAAAGCTTC 222 323 1531 Antisense
GAGAAACCAGTTACTCCATCTCCAA 469 389 1576 Antisense
CTGCTCCACAACTTGTCCAAAAGCC 235 237 1634 Antisense
ACCCCTACTGATGCATCTAAACCTT 169 91 1663 Antisense
TCTAAACCTTTTGTTGCTCAACCAC 691 607 1678 Antisense
TCAACCACCATTTGCTCCAAATCTG 415 631 1695 Antisense
TCAACAGCCTTCCAACTTCAATATC 572 629 1741 Antisense
Sequence Source Affymetrix Proprietary Database