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[191709_at] RTS1 PROTEIN (SCS1 PROTEIN)

Description W08G11.4 /REP_DB=WormBase Gene ID /WP=CE16561 /TR=O18178 /GB=CAB07297.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=RTS1 PROTEIN (SCS1 PROTEIN)
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 92      6grp_total > 66      4grp_total > 46      6grp_highest_sub > Da      6grp_high1_sub > Da      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 659
1 2 3 4 range
A 1088.3
(3)
P 		761.2
(-0.4)
P 		571.4
(-2.4)
P 		513.5
(-3)
P 		575
B 980.5
(3)
P 		638.5
(-1.9)
P 		562.5
(-3)
P 		797.7
(0.4)
P 		418
C 927.6
(3)
P 		635.1
(-0.5)
P 		704.1
(0.3)
P 		428.9
(-3)
P 		499
avr 998.8
(3) 		678.3
(-1.6) 		612.7
(-2.5) 		580
(-3) 		419

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 526
1 2 3 4 5 6 range
A 221
(-0.8)
P 		221.2
(-0.8)
P 		309.9
(1.8)
P 		146.1
(-3)
P 		158.9
(-2.6)
P 		349.9
(3)
P 		204
B 284
(-0.8)
P 		214.2
(-1.6)
P 		240.5
(-1.3)
P 		269.3
(-1)
P 		93.9
(-3)
P 		619.7
(3)
P 		526
C 164.6
(-2.6)
P 		189
(-2.2)
P 		278.7
(-0.8)
P 		232.8
(-1.5)
P 		139.7
(-3)
P 		517.4
(3)
P 		378
avr 223.2
(-1.5) 		208.1
(-1.7) 		276.4
(-0.6) 		216.1
(-1.6) 		130.8
(-3) 		495.7
(3) 		365
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 324
1 2 3 4 range
A 396.3
(3)
P 		165.2
(-1.3)
P 		149.4
(-1.6)
P 		75.2
(-3)
P 		321
B 312.7
(3)
P 		157.7
(-2.1)
P 		130.4
(-3)
P 		170
(-1.7)
P 		182
C 307.1
(3)
P 		182.6
(-0.2)
P 		245.4
(1.4)
P 		72.3
(-3)
P 		235
avr 338.7
(3) 		168.5
(-1.4) 		175.1
(-1.2) 		105.8
(-3) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 40.7
(-2.6)
P 		78.7
(2.2)
P 		67.5
(0.8)
P 		37.1
(-3)
P 		48
(-1.6)
P 		85.2
(3)
P 		48
B 98.8
(-1.1)
P 		71.3
(-2)
P 		58.4
(-2.4)
P 		71.3
(-2)
P 		38.1
(-3)
P 		231.1
(3)
P 		193
C 61
(-2.3)
P 		57.7
(-2.4)
P 		70.9
(-1.8)
P 		46.8
(-2.9)
P 		45.2
(-3)
P 		173.2
(3)
P 		128
avr 66.8
(-1.8) 		69.2
(-1.7) 		65.6
(-1.9) 		51.7
(-2.6) 		43.8
(-3) 		163.2
(3) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191709_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13257
Sequence Type Exemplar sequence
Representative Public ID W08G11.4 NCBI
Target Description W08G11.4 /REP_DB=WormBase Gene ID /WP=CE16561 /TR=O18178 /GB=CAB07297.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=RTS1 PROTEIN (SCS1 PROTEIN)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074732(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074732 NCBI Caenorhabditis elegans W08G11.4 (W08G11.4) mRNA, complete cds. 9/11 None
SNAP00000011325 ENSEMBL cdna:SNAP chromosome:CEL140:V:16360235:16369244:1 9/11 None
GENEFINDER00000011331 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16360235:16369461:1 9/11 None
W08G11.4 ENSEMBL cdna:known chromosome:CEL140:V:16360104:16370122:1 gene:W08G11.4 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16360234-16367026(+) 100.0 100.0
Public Domain and Genome References
Gene Title RTS1 PROTEIN (SCS1 PROTEIN)
Ensembl W08G11.4
Entrez Gene 180100 Entrez gene
SwissProt O18178 EMBL-EBI
WormBase CE32003 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258176_AT serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative at
CANINE:1605221_AT similar to epsilon isoform of regulatory subunit B56, protein phosphatase 2A cfa
CANINE_2:CFA.1638.1.A1_AT similar to epsilon isoform of regulatory subunit B56, protein phosphatase 2A cfa
CANINE_2:CFA.20148.1.S1_S_AT similar to epsilon isoform of regulatory subunit B56, protein phosphatase 2A cfa
CANINE_2:CFAAFFX.24197.1.S1_S_AT similar to epsilon isoform of regulatory subunit B56, protein phosphatase 2A cfa
DROSOPHILA_2:1629187_S_AT widerborst dm
DROSOPHILA_2:1626385_S_AT widerborst dm
DROSGENOME1:154680_AT widerborst dm
CHICKEN:GGAAFFX.7523.1.S1_AT similar to epsilon isoform of regulatory subunit B56, protein phosphatase 2A; PP2A, B subunit, B epsilon isoform; PP2A, B subunit, B56 epsilon isoform; PP2A, B subunit, PR61 epsilon isoform; PP2A, B subunit, R5 epsilon isoform; Serine/threonine pro... gga
HG-U95AV2:32734_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-FOCUS:203338_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U133A_2:203338_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U133A:203338_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U133_PLUS_2:203338_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HUGENEFL:L76703_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
U133_X3P:G5453955_3P_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
U133_X3P:HS.319817.0.A1_3P_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U133_PLUS_2:229322_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U133B:229322_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U95C:56629_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U95C:56638_G_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U133_PLUS_2:228070_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U133B:228070_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HU35KSUBC:RC_AA455150_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
U133_X3P:HS2.435271.1.S1_3P_X_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
U133_X3P:HS.283362.0.A1_3P_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
U133_X3P:HS.122684.1.S1_3P_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
U133_X3P:1562817_3P_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U133_PLUS_2:1562817_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U133_PLUS_2:227630_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U133B:227630_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U95B:53735_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U95E:76264_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U133_PLUS_2:231101_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U133B:231101_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U95D:73779_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U95E:78176_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HG-U95D:86965_R_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HU35KSUBA:AA056140_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
HU35KSUBA:AA056319_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
U133_X3P:HS.122684.0.A1_3P_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform hs
MOUSE430_2:1428462_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform mm
MOE430B:1428462_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform mm
MOUSE430_2:1452788_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform mm
MOE430B:1452788_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform mm
MOUSE430_2:1428461_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform mm
MOE430B:1428461_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform mm
MOE430B:1428463_A_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform mm
MOUSE430_2:1428463_A_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform mm
MG-U74BV2:114061_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform mm
MG-U74BV2:113530_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform mm
MG-U74BV2:164820_I_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform mm
MG-U74BV2:164150_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform mm
MG-U74BV2:163059_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform mm
MG-U74BV2:162885_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform mm
MU11KSUBA:AA285426_AT MKIAA4006 protein mm
MG-U74AV2:95955_AT MKIAA4006 protein mm
MOE430A:1443949_AT MKIAA4006 protein mm
MOUSE430A_2:1443949_AT MKIAA4006 protein mm
MOUSE430_2:1443949_AT MKIAA4006 protein mm
MOE430B:1439401_X_AT MKIAA4006 protein mm
MOUSE430_2:1439401_X_AT MKIAA4006 protein mm
MOUSE430_2:1443533_AT MKIAA4006 protein mm
MOE430B:1443533_AT MKIAA4006 protein mm
MOUSE430_2:1446356_AT MKIAA4006 protein mm
MOE430B:1446356_AT MKIAA4006 protein mm
MU19KSUBA:TC20678_AT MKIAA4006 protein mm
MU19KSUBA:TC24810_AT MKIAA4006 protein mm
MU19KSUBA:TC24993_AT MKIAA4006 protein mm
MU19KSUBB:TC30640_AT MKIAA4006 protein mm
MU19KSUBC:TC41843_AT MKIAA4006 protein mm
RAE230A:1388965_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform (predicted) rn
RAT230_2:1388965_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform (predicted) rn
RAE230B:1395826_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform (predicted) rn
RAT230_2:1395826_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform (predicted) rn
RAE230B:1379554_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform (predicted) rn
RAT230_2:1379554_AT protein phosphatase 2, regulatory subunit B (B56), epsilon isoform (predicted) rn
RAE230B:1397605_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform (predicted) rn
RAT230_2:1397605_AT Protein phosphatase 2, regulatory subunit B (B56), epsilon isoform (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
159 protein phosphatase type 2A complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8601 protein phosphatase type 2A regulator activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07297 Hypothetical protein W08G11.4 [Caenorhabditis elegans] ref|NP_507133.2| W08G11.4 [Caenorhabditis elegans] 0.0
blast EAA08635 ENSANGP00000020339 [Anopheles gambiae str. PEST] ref|XP_312967.2| ENSANGP00000020339 [Anopheles gambiae str. PEST] 1.0E-176
blast AAN14118 CG5643-PG, isoform G [Drosophila melanogaster] gb|AAN14117.1| CG5643-PF, isoform F [Drosophila melanogaster] gb|AAN14116.1| CG5643-PE, isoform E [Drosophila melanogaster] gb|AAN14115.1| CG5643-PD, isoform D [Drosophila melanogaster] gb|AAN14114.1| CG5643-PC, isoform C [Drosophila melanogaster] gb|AAN14113.1| CG5643-PB, isoform B [Drosophila melanogaster] gb|AAF56720.2| CG5643-PA, isoform A [Drosophila melanogaster] ref|NP_733220.1| CG5643-PG, isoform G [Drosophila melanogaster] ref|NP_733219.1| CG5643-PF, isoform F [Drosophila melanogaster] ref|NP_733218.1| CG5643-PE, isoform E [Drosophila melanogaster] ref|NP_733217.1| CG5643-PD, isoform D [Drosophila melanogaster] ref|NP_733216.1| CG5643-PB, isoform B [Drosophila melanogaster] ref|NP_733215.1| CG5643-PA, isoform A [Drosophila melanogaster] ref|NP_651569.1| CG5643-PC, isoform C [Drosophila melanogaster] gb|AAD38671.1| BcDNA.LD34343 [Drosophila melanogaster] 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR002554 EMBL-EBI Protein phosphatase 2A, regulatory B subunit, B56 1.0E-126
Pfam IPR002554 EMBL-EBI Protein phosphatase 2A, regulatory B subunit, B56 1.0E-126
Pfam IPR002554 EMBL-EBI Protein phosphatase 2A, regulatory B subunit, B56 1.8E-97
Sequence
Target Sequence 
>C. ELEGANS:191709_AT
actattgctcaattttcgacggaaaaagaggttatgttcctgggtgaagtggaggaaatt
ctcgacattatcgaaccggaacaattcaaaaagattatcgatccattattccgtcaattg
gccaaatgtgtcagtagtccacattttcaagttgctgaacgggctctctacttttggaat
aatgaatatatattgtcattaattgaggatacaagcagtttggtgatgccgattatgttc
ccagcgctctatcggatttccaaagagcactggaatcaaacaattgttgcacttgtctat
aatgtactcaaaacttttatggaaatgaatggaaaactgtttgatgagcttacttctacg
tacaaaggtgaacgattgcgggaaaagcaacgagaaaaggatcgtgatgctttttggaag
aaaatggaagctcttgaattgaatccaccggctgaaggaaaagaagtgacaccttcgttg
tttccagagaagttgactgattatttgaagaaggttcgtgtggatttttggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTATTGCTCAATTTTCGACGGAAA 92 103 1042 Antisense
GATTATCGATCCATTATTCCGTCAA 410 429 1134 Antisense
GATCCATTATTCCGTCAATTGGCCA 71 417 1141 Antisense
AATTGGCCAAATGTGTCAGTAGTCC 78 179 1157 Antisense
GTAGTCCACATTTTCAAGTTGCTGA 258 457 1175 Antisense
TTCAAGTTGCTGAACGGGCTCTCTA 491 685 1187 Antisense
ACGGGCTCTCTACTTTTGGAATAAT 92 93 1200 Antisense
TGGTGATGCCGATTATGTTCCCAGC 491 553 1262 Antisense
CAGCGCTCTATCGGATTTCCAAAGA 575 203 1283 Antisense
GTTGCACTTGTCTATAATGTACTCA 207 439 1327 Antisense
GAAGGTTCGTGTGGATTTTTGGAGA 178 335 1551 Antisense
Sequence Source Affymetrix Proprietary Database