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[191707_at] protein tyrosine phosphatase

Description F38H4.4 /REP_DB=WormBase Gene ID /WP=CE10064 /TR=Q20179 /GB=CAB01172.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster 6grp_total > 89      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 10.7
(-0.9)
A 		2.4
(-3)
A 		25.8
(3)
A 		4.2
(-2.5)
A 		23
B 11.7
(-3)
A 		31.8
(3)
A 		31.4
(2.9)
A 		23.8
(0.6)
A 		20
C 19.7
(0.4)
A 		30.1
(3)
A 		5.7
(-3)
A 		20.8
(0.7)
A 		24
avr 14
(-3) 		21.4
(3) 		21
(2.7) 		16.3
(-1.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 47.4
(2.5)
A 		21.9
(-0.8)
A 		19.3
(-1.1)
A 		4.7
(-3)
A 		37.4
(1.2)
A 		51.3
(3)
A 		47
B 5.3
(-2.8)
A 		5.4
(-2.8)
A 		3.2
(-3)
A 		16.7
(-1.7)
A 		49.3
(1.3)
A 		67.2
(3)
P 		64
C 3.4
(-2.8)
A 		21.8
(-0.5)
A 		1.7
(-3)
A 		4.6
(-2.6)
A 		24.6
(-0.1)
A 		49.3
(3)
P 		48
avr 18.7
(-1.7) 		16.4
(-2) 		8.1
(-3) 		8.7
(-2.9) 		37.1
(0.6) 		55.9
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.9
(0.3)
A 		0.5
(-3)
A 		6.7
(3)
A 		0.6
(-2.9)
A 		6
B 3.7
(-3)
A 		7.8
(3)
A 		7.3
(2.3)
A 		5.1
(-1)
A 		4
C 6.5
(1.1)
A 		8.6
(3)
A 		2
(-3)
A 		3.5
(-1.6)
A 		7
avr 4.7
(0.8) 		5.6
(3) 		5.3
(2.3) 		3.1
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 8.7
(1)
A 		7.8
(0.5)
A 		4.2
(-1.4)
A 		1.2
(-3)
A 		11.3
(2.4)
A 		12.5
(3)
A 		11
B 1.9
(-2.7)
A 		1.8
(-2.8)
A 		0.8
(-3)
A 		4.4
(-2.1)
A 		20
(1.7)
A 		25.1
(3)
P 		24
C 1.3
(-2.7)
A 		6.7
(-0.7)
A 		0.4
(-3)
A 		0.9
(-2.8)
A 		8
(-0.2)
A 		16.5
(3)
P 		16
avr 4
(-2.2) 		5.4
(-1.7) 		1.8
(-3) 		2.2
(-2.9) 		13.1
(1.2) 		18
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191707_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8426
Sequence Type Exemplar sequence
Representative Public ID F38H4.4 NCBI
Target Description F38H4.4 /REP_DB=WormBase Gene ID /WP=CE10064 /TR=Q20179 /GB=CAB01172.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069842(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069842 NCBI Caenorhabditis elegans F38H4.4 (F38H4.4) mRNA, complete cds. 11/11 None
SNAP00000007679 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11848265:11850170:1 11/11 None
GENEFINDER00000007689 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11848265:11850170:1 11/11 None
F38H4.4 ENSEMBL cdna:known chromosome:CEL140:IV:11848220:11850191:1 gene:F38H4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11848270-11850176(+) 93.43 100.0
Public Domain and Genome References
Gene Title protein tyrosine phosphatase
Ensembl F38H4.4
Entrez Gene 178115 Entrez gene
SwissProt Q20179 EMBL-EBI
WormBase CE10064 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01172 Hypothetical protein F38H4.4 [Caenorhabditis elegans] ref|NP_502243.1| F38H4.4 [Caenorhabditis elegans] 0.0
blast AAB03142 Hypothetical protein C46A5.1 [Caenorhabditis elegans] ref|NP_501277.1| C46A5.1 [Caenorhabditis elegans] 1.0E-107
blast CAE70876 Hypothetical protein CBG17666 [Caenorhabditis briggsae] 4.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.5E-59
Sequence
Target Sequence 
>C. ELEGANS:191707_AT
tgggaggggatttcgtgtttccgaggaatcaagattttctaaatttcgaagaacgttcaa
tcagagttggagagttcaaacgtgttgagattatggatggatgggttctgaaagttgtta
gtgttagtaatggagactacaagtcattccttcacatccaccactacaatgcatggcctc
acaacaatatacccggaaatggatctccaaagtttgtgaaacagatttggcagcttcaat
cagttcttcgcaagtactctccatcaactccaactgtatacatgagtctgtctggatgtg
gaagagctggcacatttgccttgttcgagaccgcccatctttctcttcacagtgagcagg
ctacattggatctggttaagtgcttggagatggttcgcaatggacgcatacatgcttgtc
agaatctgactcagttttcttttgtctacacacttttggctgagcatatactggataatg
ggttttgcaaattggccattccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGAGGGGATTTCGTGTTTCCGAG 213 553 914 Antisense
AGACTACAAGTCATTCCTTCACATC 256 71 1047 Antisense
CACTACAATGCATGGCCTCACAACA 616 197 1075 Antisense
TGGCCTCACAACAATATACCCGGAA 177 545 1087 Antisense
TTGGCAGCTTCAATCAGTTCTTCGC 209 709 1140 Antisense
AATCAGTTCTTCGCAAGTACTCTCC 233 171 1151 Antisense
GAGCTGGCACATTTGCCTTGTTCGA 340 387 1217 Antisense
CCCATCTTTCTCTTCACAGTGAGCA 607 257 1247 Antisense
GGTTCGCAATGGACGCATACATGCT 575 507 1305 Antisense
ACTCAGTTTTCTTTTGTCTACACAC 200 101 1342 Antisense
GGGTTTTGCAAATTGGCCATTCCGA 393 487 1393 Antisense
Sequence Source Affymetrix Proprietary Database