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[191706_at] 2,4-dienoyl-CoA reductase

Description W01C9.4 /REP_DB=WormBase Gene ID /WP=CE02370 /TR=SW:Q23116 /GB=CAA90268.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=2,4-dienoyl-CoA reductase
Cluster 6grp_total > 88      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 39.7
(-1.8)
A 		41.5
(-1.7)
A 		6.6
(-3)
A 		167.3
(3)
A 		161
B 62.6
(2.9)
A 		63.2
(3)
A 		29.1
(-3)
A 		50.6
(0.8)
A 		34
C 43
(-3)
A 		44.5
(-2.9)
A 		55.5
(-2.2)
A 		141.5
(3)
P 		99
avr 48.4
(-1.8) 		49.7
(-1.7) 		30.4
(-3) 		119.8
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 14
(-3)
A 		33.9
(-2)
A 		38.6
(-1.8)
A 		39.6
(-1.8)
A 		81.1
(0.2)
P 		139.5
(3)
P 		126
B 38.9
(-2.5)
A 		32
(-3)
A 		36.6
(-2.7)
A 		55.8
(-1.4)
A 		114.4
(2.6)
P 		120
(3)
P 		88
C 45.1
(-2.1)
A 		48.5
(-1.9)
A 		53.3
(-1.7)
A 		28.5
(-3)
A 		84
(-0.1)
P 		141.7
(3)
P 		113
avr 32.7
(-3) 		38.1
(-2.7) 		42.8
(-2.4) 		41.3
(-2.5) 		93.2
(0.6) 		133.7
(3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 14.5
(0.4)
A 		9
(-1.1)
A 		1.7
(-3)
A 		24.5
(3)
A 		23
B 20
(3)
A 		15.6
(1)
A 		6.8
(-3)
A 		10.8
(-1.2)
A 		13
C 14.2
(-2.2)
A 		12.8
(-3)
A 		19.3
(0.5)
A 		23.9
(3)
P 		11
avr 16.2
(1) 		12.5
(-1.2) 		9.3
(-3) 		19.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 2.6
(-3)
A 		12.1
(-1.2)
A 		8.4
(-1.9)
A 		10
(-1.6)
A 		24.5
(1.2)
P 		34
(3)
P 		31
B 13.5
(-2.3)
A 		10.6
(-2.7)
A 		8.9
(-3)
A 		14.8
(-2.1)
A 		46.5
(3)
P 		44.8
(2.7)
P 		38
C 16.7
(-1.4)
A 		14.8
(-1.7)
A 		13.6
(-1.9)
A 		5.7
(-3)
A 		27.2
(0.1)
P 		47.4
(3)
P 		42
avr 10.9
(-2.9) 		12.5
(-2.6) 		10.3
(-3) 		10.2
(-3) 		32.7
(1.2) 		42.1
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191706_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3919
Sequence Type Exemplar sequence
Representative Public ID W01C9.4 NCBI
Target Description W01C9.4 /REP_DB=WormBase Gene ID /WP=CE02370 /TR=SW:Q23116 /GB=CAA90268.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=2,4-dienoyl-CoA reductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063404 NCBI Caenorhabditis elegans W01C9.4 (W01C9.4) mRNA, complete cds. 11/11 None
SNAP00000001841 ENSEMBL cdna:SNAP chromosome:CEL140:II:8545626:8546732:1 11/11 None
GENEFINDER00000001843 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8545626:8546732:1 11/11 None
W01C9.4 ENSEMBL cdna:known chromosome:CEL140:II:8545626:8546732:1 gene:W01C9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8545622-8546729(+) 100.0 100.0
Public Domain and Genome References
Gene Title 2,4-dienoyl-CoA reductase
Ensembl W01C9.4
Entrez Gene 189090 Entrez gene
SwissProt Q23116 EMBL-EBI
WormBase CE02370 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90268 Hypothetical protein W01C9.4 [Caenorhabditis elegans] ref|NP_495805.1| W01C9.4 [Caenorhabditis elegans] sp|Q23116|YWC4_CAEEL Hypothetical oxidoreductase W01C9.4 1.0E-164
blast CAA90268 Hypothetical protein W01C9.4 [Caenorhabditis elegans] ref|NP_495805.1| W01C9.4 [Caenorhabditis elegans] sp|Q23116|YWC4_CAEEL Hypothetical oxidoreductase W01C9.4 1.0E-161
blast CAA91310 Hypothetical protein T05C12.3 [Caenorhabditis elegans] ref|NP_495714.1| DYnein Light chain (Tctex type] family member (dylt-3) [Caenorhabditis elegans] sp|Q22230|YVX3_CAEEL Hypothetical oxidoreductase T05C12.3 1.0E-141
blast CAA91310 Hypothetical protein T05C12.3 [Caenorhabditis elegans] ref|NP_495714.1| DYnein Light chain (Tctex type] family member (dylt-3) [Caenorhabditis elegans] sp|Q22230|YVX3_CAEEL Hypothetical oxidoreductase T05C12.3 1.0E-138
blast CAE57591 Hypothetical protein CBG00572 [Caenorhabditis briggsae] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 5.0E-23
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 8.7E-18
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 2.1E-46
Sequence
Target Sequence 
>C. ELEGANS:191706_AT
gatcttggtcaacaatgcagctggtaattttattatggcaactgagcttctctcttcaaa
tgcatatggaacaattattgatattgtgctcaaaggaacattcaatgttacaactgagct
cggaaaacgttgtattcagaacaagacaggtgcctcaatcacttccattactgctggtta
tgcacgagctggtgctccattcattgttccttctgctgtttctaaagctggagttgagac
aatgacaaaatcattggcaaccgaatggtcaaaatatggtcttcgtttcaatgcagtatc
tcctggaccaattccaacaaaaggtgcatggggaagattgaattcgggagaaatgggtga
tatcgccgaaaaaatgaagtttttgaatccagagggtcgcgttgggtcacctgaagaagt
tgcaaatttagttgcatttatttcttctgatcatatgtcatttttgaatggagcgattat
tgacttggatggtggccaacaacatttcaatcatggttcccatatgggcgactttttgca
ctcatgggatcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTGGTCAACAATGCAGCTGGT 526 419 330 Antisense
TATGGCAACTGAGCTTCTCTCTTCA 582 655 363 Antisense
GAGCTTCTCTCTTCAAATGCATATG 28 389 373 Antisense
CAAGACAGGTGCCTCAATCACTTCC 506 185 471 Antisense
CAATCACTTCCATTACTGCTGGTTA 221 179 485 Antisense
TACTGCTGGTTATGCACGAGCTGGT 546 645 498 Antisense
GAATCCAGAGGGTCGCGTTGGGTCA 85 331 714 Antisense
GTCGCGTTGGGTCACCTGAAGAAGT 629 455 725 Antisense
TGGTGGCCAACAACATTTCAATCAT 416 553 819 Antisense
TTCCCATATGGGCGACTTTTTGCAC 626 695 846 Antisense
GACTTTTTGCACTCATGGGATCACA 421 371 859 Antisense
Sequence Source Affymetrix Proprietary Database