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[191705_at] 7TM chemoreceptor, str family

Description ZC513.11 /REP_DB=WormBase Gene ID /WP=CE18437 /GEN=str-139 /TR=O45981 /GB=AAC48273.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 25      4grp_total > 26      6grp_cgc > 24      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 2.6
(-2.9)
A 		17
(-1.3)
A 		1.8
(-3)
A 		56.8
(3)
A 		55
B 19.7
(0.6)
A 		29
(2.7)
A 		30.3
(3)
P 		3.4
(-3)
A 		27
C 3.1
(-2.9)
A 		24.9
(0.9)
A 		2.4
(-3)
A 		37.2
(3)
A 		35
avr 8.5
(-3) 		23.6
(0.8) 		11.5
(-2.3) 		32.5
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 30.1
(3)
A 		0.7
(-3)
A 		3.8
(-2.4)
A 		1.2
(-2.9)
A 		1.6
(-2.8)
A 		2.1
(-2.7)
A 		29
B 14.7
(0.2)
A 		25.3
(3)
A 		2.6
(-2.9)
A 		2.8
(-2.8)
A 		2.2
(-3)
A 		16.5
(0.7)
A 		23
C 9.1
(-1.4)
A 		28.1
(3)
A 		20.7
(1.3)
A 		6.4
(-2)
A 		7.7
(-1.7)
A 		2.2
(-3)
A 		26
avr 18
(3) 		18
(3) 		9
(-0.7) 		3.5
(-3) 		3.8
(-2.9) 		6.9
(-1.6) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.9
(-2.7)
A 		3.7
(-0.5)
A 		0.5
(-3)
A 		8.3
(3)
A 		8
B 6.3
(2.2)
A 		7.2
(3)
A 		7
(2.8)
P 		0.7
(-3)
A 		7
C 1
(-2.8)
A 		7.2
(3)
A 		0.8
(-3)
A 		6.3
(2.2)
A 		6
avr 2.7
(-3) 		6
(3) 		2.8
(-2.8) 		5.1
(1.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 5.5
(3)
A 		0.2
(-3)
A 		0.8
(-2.3)
A 		0.3
(-2.9)
A 		0.5
(-2.7)
A 		0.5
(-2.7)
A 		5
B 5.1
(0.5)
A 		8.4
(3)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		0.9
(-2.8)
A 		6.1
(1.2)
A 		8
C 3.4
(-0.9)
A 		8.6
(3)
A 		5.3
(0.5)
A 		1.3
(-2.5)
A 		2.5
(-1.6)
A 		0.7
(-3)
A 		8
avr 4.7
(1.8) 		5.7
(3) 		2.2
(-1.3) 		0.8
(-3) 		1.3
(-2.4) 		2.4
(-1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191705_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11819
Sequence Type Exemplar sequence
Representative Public ID ZC513.11 NCBI
Target Description ZC513.11 /REP_DB=WormBase Gene ID /WP=CE18437 /GEN=str-139 /TR=O45981 /GB=AAC48273.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072676(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072676 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-138) (str-138) mRNA, complete cds. 11/11 None
ZC513.11 ENSEMBL cdna:known chromosome:CEL140:V:8061250:8062908:1 gene:ZC513.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8061250-8062909(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-138
Ensembl ZC513.11
Entrez Gene 192011 Entrez gene
SwissProt O45981 EMBL-EBI
WormBase CE18437 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48273 Seven tm receptor protein 138 [Caenorhabditis elegans] ref|NP_505077.1| Seven TM Receptor family member (str-138) [Caenorhabditis elegans] 1.0E-172
blast AAB65388 Seven tm receptor protein 140 [Caenorhabditis elegans] ref|NP_505080.1| Seven TM Receptor family member (str-140) [Caenorhabditis elegans] 5.0E-85
blast CAE66145 Hypothetical protein CBG11375 [Caenorhabditis briggsae] 1.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505077.1 7 5-27,39-61,81-103,127-149,197-219,246-268,278-300
ZC513.11 7 5-27,39-61,81-103,127-149,197-219,246-268,278-300
Sequence
Target Sequence 
>C. ELEGANS:191705_AT
gaagttgtgtttactctttgttccaactattatcttattttttgtttggtatttttccct
attgttaggcatgagcaatacagatgataaagttgaatattcaaggaaagttgttatgga
gttttatggagaaaatacctcaaaaactgcgtttgtcgcattgcagctttggagtgttga
ctcaaatggaaaatatatatttcgcatttttgatgcaatcagctatttgatttgttcgct
tataattttcatatgtttttcaacaatttgtttttgcacttcacaaattatgatgaaaca
gaagagacaacaacaatatatgagtgaaaaaactaaagaaatgaataagcaactgcttaa
aacaatgatttttcaaacaatattcccatttttcatgatgtacataactgttggtgttgt
gttgacgttacctttatttgaaattgaactgggcaagctggcaaatatacctggttcact
ggcaggcatttatcctgctgtagaacctttatttgcaatatatttcgtgaaagatttcag
aaaaacagtatttcgttgcggcaattac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTGTGTTTACTCTTTGTTCCA 441 337 387 Antisense
TTGTTCCAACTATTATCTTATTTTT 52 705 404 Antisense
GGTATTTTTCCCTATTGTTAGGCAT 487 505 434 Antisense
AACTGCGTTTGTCGCATTGCAGCTT 507 141 531 Antisense
GCATTGCAGCTTTGGAGTGTTGACT 687 307 544 Antisense
CAGCTATTTGATTTGTTCGCTTATA 671 203 606 Antisense
GTGTTGTGTTGACGTTACCTTTATT 151 485 800 Antisense
AGCTGGCAAATATACCTGGTTCACT 413 81 842 Antisense
TGGTTCACTGGCAGGCATTTATCCT 376 551 858 Antisense
ATCCTGCTGTAGAACCTTTATTTGC 352 39 878 Antisense
AACAGTATTTCGTTGCGGCAATTAC 413 137 930 Antisense
Sequence Source Affymetrix Proprietary Database