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[191704_s_at]

Description F26F4.10 /REP_DB=WormBase Gene ID /WP=CE01258 /TR=SW:Q19825 /GB=AAA91224.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=arginyl tRNA synthetase
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 55      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 56      6grp_total > 74      4grp_total > 01      6grp_cgc > 95      6grp_cgc_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4322
1 2 3 4 range
A 2628.1
(-2.1)
P 		1988.9
(-3)
P 		2641.7
(-2)
P 		6081.3
(3)
P 		4092
B 2727.2
(-1.9)
P 		1921.8
(-3)
P 		2776.5
(-1.8)
P 		6243.7
(3)
P 		4322
C 2281.3
(-2.7)
P 		2141.5
(-3)
P 		2533.4
(-2.3)
P 		5338.6
(3)
P 		3197
avr 2545.5
(-2.2) 		2017.4
(-3) 		2650.5
(-2) 		5887.9
(3) 		3871

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 621
1 2 3 4 5 6 range
A 2130
(1.2)
P 		1870.1
(-2.4)
P 		1827.2
(-3)
P 		2146.2
(1.4)
P 		2063
(0.2)
P 		2263.8
(3)
P 		437
B 2042.9
(0.5)
P 		2098.9
(1.4)
P 		2069.6
(0.9)
P 		2197.4
(3)
P 		1832.1
(-3)
P 		2135.8
(2)
P 		365
C 1949.8
(-1.5)
P 		2095.4
(-0.1)
P 		2246.5
(1.4)
P 		2411.3
(3)
P 		1790.5
(-3)
P 		2045.6
(-0.5)
P 		621
avr 2040.9
(-0.5) 		2021.5
(-0.9) 		2047.8
(-0.4) 		2251.6
(3) 		1895.2
(-3) 		2148.4
(1.3) 		356
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 899
1 2 3 4 range
A 956.9
(3)
P 		431.7
(-3)
P 		690.6
(-0)
P 		890.2
(2.2)
P 		525
B 869.7
(-0.2)
P 		474.6
(-3)
P 		643.4
(-1.8)
P 		1330.5
(3)
P 		856
C 755.2
(-0.1)
P 		615.7
(-3)
P 		883
(2.6)
P 		900.2
(3)
P 		285
avr 860.6
(1) 		507.3
(-3) 		739
(-0.4) 		1040.3
(3) 		533

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 404
1 2 3 4 5 6 range
A 392.7
(-3)
P 		665.1
(3)
P 		397.9
(-2.9)
P 		544.3
(0.3)
P 		622.5
(2.1)
P 		551.2
(0.5)
P 		272
B 710.8
(1.3)
P 		698.6
(1)
P 		502.6
(-3)
P 		582
(-1.4)
P 		744.3
(1.9)
P 		796.4
(3)
P 		294
C 722.7
(3)
P 		639.4
(0.9)
P 		571.8
(-0.8)
P 		484.9
(-3)
P 		579.4
(-0.6)
P 		684.8
(2)
P 		238
avr 608.7
(0.8) 		667.7
(2.7) 		490.8
(-3) 		537.1
(-1.5) 		648.7
(2.1) 		677.5
(3) 		187
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191704_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7199
Sequence Type Exemplar sequence
Representative Public ID F26F4.10 NCBI
Target Description F26F4.10 /REP_DB=WormBase Gene ID /WP=CE01258 /TR=SW:Q19825 /GB=AAA91224.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=arginyl tRNA synthetase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027381(11), NM_001027380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027381 NCBI Caenorhabditis elegans aRginyl aa-tRNA syntheTase family member (rrt-1) (rrt-1) mRNA, complete cds. 11/11 None
NM_001027380 NCBI Caenorhabditis elegans aRginyl aa-tRNA syntheTase family member (rrt-1) (rrt-1) mRNA, complete cds. 11/11 None
SNAP00000005758 ENSEMBL cdna:SNAP chromosome:CEL140:III:4914218:4917068:-1 11/11 None
GENEFINDER00000005762 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4914218:4917068:-1 11/11 None
F26F4.10b.1 ENSEMBL cdna:known chromosome:CEL140:III:4914057:4917078:-1 gene:F26F4.10 11/11 None
F26F4.10a ENSEMBL cdna:known chromosome:CEL140:III:4914063:4917068:-1 gene:F26F4.10 11/11 None
F26F4.10b.2 ENSEMBL cdna:known chromosome:CEL140:III:4914285:4917090:-1 gene:F26F4.10 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4914217-4917068(-) 100.0 100.0
Public Domain and Genome References
Ensembl F26F4.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05575 Arginyl aa-trna synthetase protein 1, isoform b [Caenorhabditis elegans] ref|NP_001022552.1| aRginyl aa-tRNA syntheTase family member (rrt-1) [Caenorhabditis elegans] 0.0
blast AAA91224 Arginyl aa-trna synthetase protein 1, isoform a [Caenorhabditis elegans] ref|NP_001022551.1| aRginyl aa-tRNA syntheTase family member (rrt-1) [Caenorhabditis elegans] sp|Q19825|SYR_CAEEL Probable arginyl-tRNA synthetase (Arginine--tRNA ligase) (ArgRS) 0.0
blast T16176 hypothetical protein F26F4.10 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001278 EMBL-EBI Arginyl-tRNA synthetase, class Ic 1.0E-126
Pfam IPR005148 EMBL-EBI Arginyl tRNA synthetase N-terminal domain 4.7E-30
Pfam IPR008909 EMBL-EBI Arginyl tRNA synthetase anticodon binding 9.1E-27
Pfam IPR008909 EMBL-EBI Arginyl tRNA synthetase anticodon binding 8.4E-43
Sequence
Target Sequence 
>C. ELEGANS:191704_S_AT
acaattagttgctgctcgcgatgctgtagctttcggatgcgtgaaatatgctgatttatc
tcatactcgtacacaggattacgttttctccttcgaccgaatgcttgaagatcgaggcaa
cactgcggtttacttgctttatgcatacactcgaattcaatcaattttcgaaaaagacga
agttaaaaatgttgatttggtcaaatacattgcgagtacaccaacactcccattggatca
tccaggagagtttaaactcgccaaacaattgttgaagctctcggattgtgttcttcttgt
tttggacagtcttatgcttcatcaaatgtgcgactacgtatatcagttggccactctgtt
ccacgacttctacaacgagtgttacgttattgaaaataaggaaggagaaaaaccatttgt
ccatatgcatcgtctcgctttgtgtgatgttaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATTAGTTGCTGCTCGCGATGCT 516 111 1629 Antisense
GATGCTGTAGCTTTCGGATGCGTGA 349 413 1648 Antisense
TTTTCTCCTTCGACCGAATGCTTGA 150 675 1712 Antisense
AACACTGCGGTTTACTTGCTTTATG 69 135 1747 Antisense
CAACACTCCCATTGGATCATCCAGG 535 189 1850 Antisense
GAAGCTCTCGGATTGTGTTCTTCTT 147 343 1902 Antisense
TTTTGGACAGTCTTATGCTTCATCA 596 677 1928 Antisense
TATATCAGTTGGCCACTCTGTTCCA 89 661 1967 Antisense
CTGTTCCACGACTTCTACAACGAGT 98 237 1984 Antisense
ACCATTTGTCCATATGCATCGTCTC 199 85 2040 Antisense
CGTCTCGCTTTGTGTGATGTTACCC 576 245 2059 Antisense
Sequence Source Affymetrix Proprietary Database