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[191703_s_at]

Description C01G10.11 /REP_DB=WormBase Gene ID /WP=CE07820 /GEN=unc-76 /TR=Q17355 /GB=CAB02712.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UNC-76 protein
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 05      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 30      6grp_total > 06      4grp_total > 46      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 573
1 2 3 4 range
A 985
(3)
P 		524.9
(-3)
P 		576.1
(-2.3)
P 		633.7
(-1.6)
P 		460
B 1033.7
(3)
P 		739.6
(-0.4)
P 		507.6
(-3)
P 		591.8
(-2)
P 		526
C 1081
(3)
P 		784.2
(-0.9)
P 		625.7
(-3)
P 		649.9
(-2.7)
P 		455
avr 1033.2
(3) 		682.9
(-1.5) 		569.8
(-3) 		625.1
(-2.3) 		463

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 596
1 2 3 4 5 6 range
A 1148.2
(3)
P 		1036.7
(1.9)
P 		661.9
(-2)
P 		563.1
(-3)
P 		718
(-1.4)
P 		726.2
(-1.3)
P 		585
B 1133.9
(3)
P 		956.6
(1.1)
P 		755.7
(-1)
P 		764.3
(-0.9)
P 		672.7
(-1.9)
P 		565.9
(-3)
P 		568
C 1136.6
(3)
P 		885.2
(0.4)
P 		863.4
(0.2)
P 		733.1
(-1.1)
P 		727.6
(-1.2)
P 		552.5
(-3)
P 		584
avr 1139.6
(3) 		959.5
(0.9) 		760.3
(-1.3) 		686.8
(-2.2) 		706.1
(-2) 		614.9
(-3) 		525
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 266
1 2 3 4 range
A 358.6
(3)
P 		113.9
(-2.5)
P 		150.6
(-1.7)
P 		92.8
(-3)
P 		266
B 329.6
(3)
P 		182.7
(-1.2)
P 		117.6
(-3)
P 		126.1
(-2.8)
P 		212
C 357.8
(3)
P 		225.5
(-0.2)
P 		218.1
(-0.4)
P 		109.6
(-3)
P 		248
avr 348.7
(3) 		174
(-1.4) 		162.1
(-1.7) 		109.5
(-3) 		239

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 211.7
(-1.2)
P 		368.7
(3)
P 		144.1
(-3)
P 		142.8
(-3)
P 		216.7
(-1)
P 		176.8
(-2.1)
P 		226
B 394.5
(3)
P 		318.4
(0.8)
P 		183.5
(-3)
P 		202.4
(-2.5)
P 		273.3
(-0.4)
P 		211
(-2.2)
P 		211
C 421.3
(3)
P 		270.1
(-0.3)
P 		219.8
(-1.4)
P 		147.4
(-3)
P 		235.4
(-1.1)
P 		184.9
(-2.2)
P 		274
avr 342.5
(3) 		319.1
(2.2) 		182.5
(-2.4) 		164.2
(-3) 		241.8
(-0.4) 		190.9
(-2.1) 		178
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191703_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12591
Sequence Type Exemplar sequence
Representative Public ID C01G10.11 NCBI
Target Description C01G10.11 /REP_DB=WormBase Gene ID /WP=CE07820 /GEN=unc-76 /TR=Q17355 /GB=CAB02712.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UNC-76 protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074311(11), NM_171553(11), U60058(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074311 NCBI Caenorhabditis elegans UNCoordinated family member (unc-76) (unc-76) mRNA, complete cds. 11/11 None
NM_171553 NCBI Caenorhabditis elegans UNCoordinated family member (unc-76) (unc-76) mRNA, complete cds. 11/11 None
U60058 NCBI Caenorhabditis elegans UNC-76 (unc-76) mRNA, major splice form, partial cds. 11/11 A 
GENEFINDER00000004635 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15074449:15082298:1 10/11 None
C01G10.11a ENSEMBL cdna:known chromosome:CEL140:V:15074342:15082740:1 gene:C01G10.11 11/11 A 
C01G10.11b ENSEMBL cdna:known chromosome:CEL140:V:15074349:15082730:1 gene:C01G10.11 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004617 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15074448-15082298(+) 100.0 100.0
Public Domain and Genome References
Ensembl C01G10.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02712 Hypothetical protein C01G10.11a [Caenorhabditis elegans] ref|NP_506712.3| UNCoordinated family member (unc-76) [Caenorhabditis elegans] gb|AAA68954.1| UNC-76 0.0
blast AAC47517 UNC-76 0.0
blast CAC70075 Hypothetical protein C01G10.11b [Caenorhabditis elegans] ref|NP_741641.1| UNCoordinated family member (unc-76) [Caenorhabditis elegans] gb|AAC47518.1| UNC-76 0.0
Protein Domains
Database ID Description E-Value
scop a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain 0.610000014305115
scop a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain 0.529999971389771
scop a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain 0.46000000834465
scop a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain 0.340000003576279
Sequence
Target Sequence 
>C. ELEGANS:191703_S_AT
acacctccacagactgctgatcaagttatcgaagaaattgatgaaatgttacagtcatgc
gatttcactggctcaatgatgacggatcgaacgatggaatcagttgattcaatgtattct
tcaatgcgttcaccatttccatcatcaattcaatcatcagatgctgatattaaacttcga
agtgcacaggcccttgtcagcaatccggataatcttcaagagctctcctattcgaaattg
gtgacactatgcgcggaaatggagcagctgattcgggtttataatgagagtttggtcgat
gagctggcacatcgagatgagctggactacgaaaaagagatgaaaaactcgtttatttca
ctattactggcgattcaaaacaagcgacgagtttacgctaatgatcggaaacggaaggtc
ggaaaggcgtcggatgcttcacaattgccacaatatttgacagcgacaattccgtacaac
gatcatcaacatatcgataatgcgtcgattgcgtctctaatcaaaattctccgcgcaatc
cacgatgacaatacgacagtacccaccctgctgacagactacatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACCTCCACAGACTGCTGATCAAG 643 109 550 Antisense
TTCAATGCGTTCACCATTTCCATCA 515 685 669 Antisense
TAAACTTCGAAGTGCACAGGCCCTT 172 625 720 Antisense
GCCCTTGTCAGCAATCCGGATAATC 708 285 739 Antisense
ATCTTCAAGAGCTCTCCTATTCGAA 538 31 761 Antisense
GAGAGTTTGGTCGATGAGCTGGCAC 5 395 835 Antisense
GTCGGATGCTTCACAATTGCCACAA 36 473 978 Antisense
GACAGCGACAATTCCGTACAACGAT 595 367 1008 Antisense
ATAATGCGTCGATTGCGTCTCTAAT 624 25 1046 Antisense
GATGACAATACGACAGTACCCACCC 580 411 1093 Antisense
CCACCCTGCTGACAGACTACATTTT 139 275 1112 Antisense
Sequence Source Affymetrix Proprietary Database