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[191701_at] 7TM chemoreceptor, srd family

Description Y38A10A.1 /REP_DB=WormBase Gene ID /WP=CE21558 /GEN=srd-20 /TR=Q9UAX5 /GB=AAD14742.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 82      4grp_total > 04      6grp_cgc > 74      6grp_cgc_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 5.6
(-3)
A 		15.6
(-1.7)
A 		7.2
(-2.8)
A 		52.3
(3)
A 		47
B 14.2
(0.4)
A 		3.9
(-3)
A 		21.9
(3)
A 		5
(-2.6)
A 		18
C 38.8
(-0.5)
A 		6.2
(-2.8)
A 		3.9
(-3)
A 		88.8
(3)
A 		85
avr 19.5
(-1.4) 		8.6
(-3) 		11
(-2.6) 		48.7
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 7.4
(-2.8)
A 		7.4
(-2.8)
A 		39.1
(3)
A 		7.9
(-2.7)
A 		35.2
(2.3)
A 		6.5
(-3)
A 		33
B 6.2
(-2.9)
A 		5.8
(-3)
A 		13.3
(-0.8)
A 		11
(-1.5)
A 		26.7
(3)
A 		9.1
(-2.1)
A 		21
C 4.8
(-2.4)
A 		30.8
(3)
A 		4.6
(-2.5)
A 		26.1
(2)
A 		2
(-3)
A 		2.5
(-2.9)
A 		29
avr 6.1
(-3) 		14.7
(0.4) 		19
(2.1) 		15
(0.5) 		21.3
(3) 		6
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.1
(-2.8)
A 		3.4
(-1.4)
A 		1.9
(-3)
A 		7.7
(3)
A 		6
B 4.5
(2.1)
A 		1
(-3)
A 		5.1
(3)
A 		1.1
(-2.9)
A 		4
C 12.8
(2)
A 		1.8
(-2.8)
A 		1.3
(-3)
A 		15
(3)
A 		14
avr 6.5
(1.6) 		2.1
(-3) 		2.8
(-2.3) 		7.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.4
(-3)
A 		2.6
(-2.2)
A 		8.5
(1.6)
A 		2
(-2.6)
A 		10.6
(3)
A 		1.6
(-2.9)
A 		9
B 2.2
(-2.8)
A 		1.9
(-3)
A 		3.2
(-2.1)
A 		2.9
(-2.3)
A 		10.9
(3)
A 		3.4
(-2)
A 		9
C 1.8
(-2.2)
A 		9.4
(3)
A 		1.2
(-2.7)
A 		5.2
(0.1)
A 		0.7
(-3)
A 		0.9
(-2.9)
A 		9
avr 1.8
(-3) 		4.6
(-0) 		4.3
(-0.3) 		3.4
(-1.3) 		7.4
(3) 		2
(-2.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191701_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11450
Sequence Type Exemplar sequence
Representative Public ID Y38A10A.1 NCBI
Target Description Y38A10A.1 /REP_DB=WormBase Gene ID /WP=CE21558 /GEN=srd-20 /TR=Q9UAX5 /GB=AAD14742.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072168(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072168 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-20) (srd-20) mRNA, complete cds. 11/11 None
GENEFINDER00000035791 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6058183:6059337:1 11/11 None
Y38A10A.1 ENSEMBL cdna:known chromosome:CEL140:V:6058183:6059337:1 gene:Y38A10A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035776 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6058182-6059337(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-20
Ensembl Y38A10A.1
Entrez Gene 191809 Entrez gene
SwissProt Q9UAX5 EMBL-EBI
WormBase CE21558 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14742 Serpentine receptor, class d (delta) protein 20 [Caenorhabditis elegans] ref|NP_504569.1| Serpentine Receptor, class D (delta) family member (srd-20) [Caenorhabditis elegans] 0.0
blast CAB03132 Hypothetical protein F53F1.11 [Caenorhabditis elegans] ref|NP_506331.1| Serpentine Receptor, class D (delta) family member (srd-19) [Caenorhabditis elegans] sp|P92002|SRD19_CAEEL Serpentine receptor class delta-19 (Protein srd-19) 1.0E-172
blast CAB03131 Hypothetical protein F53F1.10 [Caenorhabditis elegans] ref|NP_506330.1| Serpentine Receptor, class D (delta) family member (srd-18) [Caenorhabditis elegans] sp|P92001|SRD18_CAEEL Serpentine receptor class delta-18 (Protein srd-18) 1.0E-145
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504569.1 6 7-29,90-112,125-147,185-207,234-256,271-290
Y38A10A.1 6 7-29,90-112,125-147,185-207,234-256,271-290
GENEFINDER00000035791 6 7-29,90-112,125-147,185-207,234-256,271-290
Sequence
Target Sequence 
>C. ELEGANS:191701_AT
taatgttctacatactgtccctggttcaagcactaacttattggacattatttgtccctc
gaaaagaaattatcctgcacgccaaacaatggtttccctactatgatcttgaaactgaaa
ctgggattctaacgggtgtaatagaccttacaaattttcttgcagtctatgcagttgcac
atagttgcctaccgttttttccagtttacataacaattttctttttacgcaagagaatta
taaaatacctaagcagtcaatctcaaatgatgtctccggatacaaaagccgctcattctc
aattactcagcgcacttactgcacaagcaatcattccaatgttcttagggattgctgttc
ttttgtattttgcttcacaatcaggactatttacatcaccaattcttgaatattcgatat
ttgcaatttctattctaatgcccgcattatctcccatcacttatttatattttgttcgac
cgtatcgtcgaaaagtgaagagcattatcagaaacccattcaaaatattgtcaagacccc
acgagcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATGTTCTACATACTGTCCCTGGT 322 637 407 Antisense
TGTCCCTGGTTCAAGCACTAACTTA 410 553 422 Antisense
AAATTATCCTGCACGCCAAACAATG 615 113 473 Antisense
GACCTTACAAATTTTCTTGCAGTCT 312 383 550 Antisense
GCAGTTGCACATAGTTGCCTACCGT 257 311 577 Antisense
ACAAAAGCCGCTCATTCTCAATTAC 27 113 688 Antisense
ATTACTCAGCGCACTTACTGCACAA 315 13 708 Antisense
ACTGCACAAGCAATCATTCCAATGT 702 97 724 Antisense
GGACTATTTACATCACCAATTCTTG 682 523 790 Antisense
CAATTTCTATTCTAATGCCCGCATT 65 181 830 Antisense
AATATTGTCAAGACCCCACGAGCGT 500 173 930 Antisense
Sequence Source Affymetrix Proprietary Database