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[191698_at] Yeast hypothetical YCR34W

Description C40H1.4 /REP_DB=WormBase Gene ID /WP=CE00112 /TR=SW:Q03574 /GB=CAA79555.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Yeast hypothetical YCR34W
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 82      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 35      6grp_total > 80      4grp_total > 49      6grp_highest_sub > 04_05      6grp_cgc > 86      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1014
1 2 3 4 range
A 198.4
(-2.9)
P 		1134
(2.9)
P 		1148.8
(3)
P 		179.2
(-3)
P 		970
B 163.9
(-2.8)
P 		1131.1
(3)
P 		1078.6
(2.7)
P 		135.1
(-3)
P 		996
C 166.4
(-3)
P 		1142
(3)
P 		1142.3
(3)
P 		263.5
(-2.4)
P 		976
avr 176.2
(-3) 		1135.7
(3) 		1123.2
(2.9) 		192.6
(-2.9) 		960

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11069
1 2 3 4 5 6 range
A 456.4
(-3)
P 		731.9
(-2.8)
P 		2272
(-1.7)
P 		8562.8
(3)
P 		5633.4
(0.8)
P 		476.4
(-3)
P 		8106
B 557.6
(-3)
P 		1017.4
(-2.7)
P 		2028.9
(-1.9)
P 		8955.1
(3)
P 		5160.2
(0.3)
P 		621.2
(-3)
P 		8398
C 355.2
(-3)
P 		998.8
(-2.7)
P 		1347.9
(-2.5)
P 		11424.2
(3)
P 		4911
(-0.5)
P 		649.5
(-2.8)
P 		11069
avr 456.4
(-3) 		916
(-2.7) 		1882.9
(-2.1) 		9647.4
(3) 		5234.9
(0.1) 		582.4
(-2.9) 		9191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 372
1 2 3 4 range
A 72.3
(-2)
P 		246.2
(1.8)
P 		300.3
(3)
P 		26.2
(-3)
P 		274
B 52.3
(-2.4)
P 		279.4
(3)
P 		249.9
(2.3)
P 		28.8
(-3)
P 		251
C 55.1
(-2.8)
P 		328.3
(1.8)
P 		398.1
(3)
P 		44.4
(-3)
P 		354
avr 59.9
(-2.4) 		284.6
(2.3) 		316.1
(3) 		33.1
(-3) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2288
1 2 3 4 5 6 range
A 84.1
(-3)
P 		260.3
(-2.5)
P 		494.8
(-1.8)
P 		2171.7
(3)
P 		1699.9
(1.6)
P 		116
(-2.9)
P 		2088
B 194
(-3)
P 		338.7
(-2.6)
P 		492.7
(-2.2)
P 		2371.9
(3)
P 		2096.5
(2.2)
P 		231.6
(-2.9)
P 		2178
C 131.7
(-3)
P 		304.8
(-2.5)
P 		343.1
(-2.4)
P 		2297.4
(3)
P 		1589.1
(1)
P 		217.4
(-2.8)
P 		2166
avr 136.6
(-3) 		301.3
(-2.5) 		443.5
(-2.1) 		2280.3
(3) 		1795.2
(1.6) 		188.3
(-2.9) 		2144
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191698_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7259
Sequence Type Exemplar sequence
Representative Public ID C40H1.4 NCBI
Target Description C40H1.4 /REP_DB=WormBase Gene ID /WP=CE00112 /TR=SW:Q03574 /GB=CAA79555.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Yeast hypothetical YCR34W
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066655(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066655 NCBI Caenorhabditis elegans fatty acid ELOngation family member (elo-4) (elo-4) mRNA, complete cds. 11/11 None
SNAP00000000789 ENSEMBL cdna:SNAP chromosome:CEL140:III:9332225:9334164:-1 11/11 None
GENEFINDER00000000794 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9332225:9334164:-1 11/11 None
C40H1.4 ENSEMBL cdna:known chromosome:CEL140:III:9332225:9334172:-1 gene:C40H1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9332220-9334160(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical YCR34W
Gene Symbol elo-4
Ensembl C40H1.4
Entrez Gene 183367 Entrez gene
SwissProt Q03574 EMBL-EBI
WormBase CE00112 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.15792.1.S1_AT similar to elongation of very long chain fatty acids like 3 cfa
U133_X3P:HS.302130.0.S1_3P_AT elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 hs
HG-U133_PLUS_2:234513_AT elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 hs
HG-U133B:234513_AT elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 hs
MOUSE430A_2:1420722_AT elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 mm
MOUSE430_2:1420722_AT elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 mm
MOE430A:1420722_AT elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 mm
MU11KSUBB:U97107_AT elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 mm
MG-U74AV2:103469_AT elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 mm
MU19KSUBC:TC35760_AT Elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3, mRNA (cDNA clone MGC:18360 IMAGE:4196583) mm
RAE230B:1385286_AT elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 (predicted) rn
RAT230_2:1385286_AT elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA79555 Hypothetical protein C40H1.4 [Caenorhabditis elegans] ref|NP_499056.1| fatty acid ELOngation family member (elo-4) [Caenorhabditis elegans] sp|Q03574|ELO4_CAEEL Putative fatty acid elongation protein 1.0E-159
blast CAE65235 Hypothetical protein CBG10118 [Caenorhabditis briggsae] 1.0E-152
blast CAE73448 Hypothetical protein CBG20897 [Caenorhabditis briggsae] 4.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR002076 EMBL-EBI GNS1/SUR4 membrane protein 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499056.1 7 51-70,83-105,130-152,159-176,186-208,215-237,252-274
C40H1.4 7 51-70,83-105,130-152,159-176,186-208,215-237,252-274
SNAP00000000789 7 51-70,83-105,130-152,159-176,186-208,215-237,252-274
GENEFINDER00000000794 7 51-70,83-105,130-152,159-176,186-208,215-237,252-274
Sequence
Target Sequence 
>C. ELEGANS:191698_AT
cattgcggttctctattgatcctctacgatcactatatgctgaaggattctacaaaactc
tgtgctattcgtgtaatccaactgatgtggctgcattttggagctttgcattcgctcttt
ccaagattgttgaacttggagacactatgttcattattttgagaaaacggccattgatct
ttttacactactatcatcatgcagcagtgttaatctacactgtccattctggtgccgagc
atactgcagctggtcgtttctacatcctaatgaactacttcgcacattctctcatgtata
cttactacacagtttctgccatgggatacagattaccgaaatgggtatcaatgactgtca
caactgttcaaacaactcaaatgttagctggagtcggaataacttggatggtgtacaaag
tgaaaactgaatacaagcttccttgtcaacaatccgtagccaatttgtatctcgcattcg
tcatctatgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTGCGGTTCTCTATTGATCCTCT 612 217 311 Antisense
AACTCTGTGCTATTCGTGTAATCCA 338 141 366 Antisense
TTGGAGCTTTGCATTCGCTCTTTCC 440 707 408 Antisense
AACGGCCATTGATCTTTTTACACTA 526 141 476 Antisense
GTTAATCTACACTGTCCATTCTGGT 554 445 519 Antisense
TCCATTCTGGTGCCGAGCATACTGC 591 589 533 Antisense
AGCATACTGCAGCTGGTCGTTTCTA 205 79 548 Antisense
TACTTCGCACATTCTCTCATGTATA 464 645 586 Antisense
GCTTCCTTGTCAACAATCCGTAGCC 249 307 747 Antisense
ATCCGTAGCCAATTTGTATCTCGCA 688 37 762 Antisense
GTATCTCGCATTCGTCATCTATGTC 227 455 777 Antisense
Sequence Source Affymetrix Proprietary Database