[Home] | [Total List]

[191696_at] 7TM chemoreceptor, srh family

Description F47C12.3 /REP_DB=WormBase Gene ID /WP=CE17836 /GEN=srh-223 /TR=Q20530 /GB=AAC24394.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 81      4grp_total > 11      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 4
(-3)
A 		13.1
(-1.9)
A 		5.5
(-2.8)
A 		51.6
(3)
A 		48
B 4.9
(2)
A 		1.8
(-3)
A 		5.5
(3)
A 		3.6
(-0.1)
A 		4
C 18.4
(2.2)
A 		14.8
(-0.2)
A 		10.6
(-3)
A 		19.6
(3)
A 		9
avr 9.1
(-2.4) 		9.9
(-2.1) 		7.2
(-3) 		24.9
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 1.5
(-3)
A 		2.8
(-2.7)
A 		4.7
(-2.3)
A 		11.5
(-0.7)
A 		13.9
(-0.2)
A 		28.1
(3)
A 		27
B 15.9
(-0.7)
A 		39.2
(3)
A 		14.1
(-1)
A 		4.9
(-2.5)
A 		23
(0.4)
A 		1.6
(-3)
A 		38
C 30.1
(1.1)
A 		8.6
(-2.5)
A 		31.6
(1.4)
A 		41.3
(3)
A 		15.6
(-1.3)
A 		5.8
(-3)
A 		36
avr 15.8
(0.2) 		16.9
(1.1) 		16.8
(1.1) 		19.2
(3) 		17.5
(1.6) 		11.8
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.5
(-2.9)
A 		2.8
(-1.6)
A 		1.4
(-3)
A 		7.6
(3)
A 		6
B 1.6
(3)
A 		0.4
(-3)
A 		1.3
(1.5)
A 		0.8
(-1)
A 		1
C 6.1
(3)
A 		4.3
(-0.9)
A 		3.7
(-2.1)
A 		3.3
(-3)
A 		3
avr 3.1
(0.3) 		2.5
(-1.7) 		2.1
(-3) 		3.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1
(-2.4)
A 		1
(-2.4)
A 		2.9
(-0.6)
A 		4.2
(0.6)
A 		6.8
(3)
A 		7
B 5.5
(-0.6)
A 		13
(3)
A 		3.4
(-1.6)
A 		1.3
(-2.7)
A 		9.3
(1.2)
A 		0.6
(-3)
A 		12
C 11.1
(3)
A 		2.6
(-2.5)
A 		8
(1)
A 		8.3
(1.2)
A 		5
(-1)
A 		1.9
(-3)
A 		9
avr 5.6
(1.8) 		5.5
(1.6) 		4.1
(-1.1) 		4.2
(-0.9) 		6.2
(3) 		3.1
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191696_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10848
Sequence Type Exemplar sequence
Representative Public ID F47C12.3 NCBI
Target Description F47C12.3 /REP_DB=WormBase Gene ID /WP=CE17836 /GEN=srh-223 /TR=Q20530 /GB=AAC24394.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068052(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068052 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-223) (srh-223) mRNA, complete cds. 11/11 None
GENEFINDER00000026891 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3973362:3983603:1 11/11 None
F47C12.3 ENSEMBL cdna:known chromosome:CEL140:IV:3981895:3983603:1 gene:F47C12.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026881 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3981900-3983609(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-223
Ensembl F47C12.3
Entrez Gene 185916 Entrez gene
SwissProt Q20530 EMBL-EBI
WormBase CE17836 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24394 Serpentine receptor, class h protein 223 [Caenorhabditis elegans] ref|NP_500453.1| Serpentine Receptor, class H family member (srh-223) [Caenorhabditis elegans] 0.0
blast AAC24390 Hypothetical protein F47C12.4 [Caenorhabditis elegans] ref|NP_500450.1| F47C12.4 [Caenorhabditis elegans] 0.0
blast AAF60596 Hypothetical protein Y46C8AL.1 [Caenorhabditis elegans] ref|NP_500445.1| Y46C8AL.1 [Caenorhabditis elegans] 0.0
blast AAC24395 Serpentine receptor, class h protein 222 [Caenorhabditis elegans] ref|NP_500452.1| Serpentine Receptor, class H family member (srh-222) [Caenorhabditis elegans] 1.0E-142
blast AAC24387 Serpentine receptor, class h protein 220 [Caenorhabditis elegans] ref|NP_500451.1| Serpentine Receptor, class H family member (srh-220) [Caenorhabditis elegans] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500453.1 7 24-46,67-89,104-123,144-163,201-223,244-266,276-298
F47C12.3 7 24-46,67-89,104-123,144-163,201-223,244-266,276-298
GENEFINDER00000026891 8 5-27,601-623,644-666,681-700,721-740,778-800,821-843,853-875
Sequence
Target Sequence 
>C. ELEGANS:191696_AT
ggcaaatacgcattccatttcttgtttttctacatttaacaggccttgtgtatttttatc
cgaactatataacaatgccacctggtgtcgaaaatcagaaagagttcattttgaaggcaa
tcccgtgtcttcatccagaagtacgtaatgctccattatacctgattgtggaggacaagt
ggaaattcttgttctggacagcctgtgaaactctactattcgctttcacaatcgtcgcaa
tgttcatttttattatcaaagctctcagaaattacggccataatcgatctcagagaacca
ttgatatgcagaaaaagcttattcaagccattacacttcagttggctattccatttttta
ttatatttattccaataagctactatacattttcaaattcctattatgcagctgtcaaca
atatcatgtacgttctcatggcaacccatggatcattttctacagttgtgatgattattg
tgcagaaaccatatcgggaatttcttctgactgtgattttattaaatagaagatgtcgaa
ctcttgccagtcggccaacaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAAATACGCATTCCATTTCTTGT 396 535 425 Antisense
CAGGCCTTGTGTATTTTTATCCGAA 127 209 464 Antisense
CATTTTGAAGGCAATCCCGTGTCTT 659 215 531 Antisense
GGACAGCCTGTGAAACTCTACTATT 524 525 620 Antisense
CTACTATTCGCTTTCACAATCGTCG 528 225 637 Antisense
TTACGGCCATAATCGATCTCAGAGA 706 681 696 Antisense
ATTACACTTCAGTTGGCTATTCCAT 38 13 754 Antisense
CATGTACGTTCTCATGGCAACCCAT 700 209 849 Antisense
GGCAACCCATGGATCATTTTCTACA 224 535 864 Antisense
GGGAATTTCTTCTGACTGTGATTTT 560 493 920 Antisense
AACTCTTGCCAGTCGGCCAACAAAT 78 141 963 Antisense
Sequence Source Affymetrix Proprietary Database