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[191695_at] B.subtilis YQJC protein like

Description D2030.5 /REP_DB=WormBase Gene ID /WP=CE09082 /TR=P90791 /GB=CAA98118.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=B.subtilis YQJC protein like
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 34      6grp_total > 41      4grp_total > 54      6grp_highest_sub > 03      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2030
1 2 3 4 range
A 2794.6
(3)
P 		1899
(-0.2)
P 		1308
(-2.3)
P 		1105.3
(-3)
P 		1689
B 3011.5
(3)
P 		1713.5
(-0.9)
P 		1510.5
(-1.5)
P 		989.1
(-3)
P 		2022
C 2662.6
(3)
P 		1710.2
(-0.4)
P 		1347.9
(-1.7)
P 		981.3
(-3)
P 		1681
avr 2822.9
(3) 		1774.2
(-0.5) 		1388.8
(-1.8) 		1025.2
(-3) 		1798

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2309
1 2 3 4 5 6 range
A 2514.3
(1.2)
P 		2033
(-0.1)
P 		3221
(3)
P 		2352.6
(0.7)
P 		1519
(-1.4)
P 		912.4
(-3)
P 		2309
B 2098.1
(-0.4)
P 		2228.3
(0)
P 		3192.9
(3)
P 		2408.7
(0.6)
P 		1555.4
(-2.1)
P 		1252.6
(-3)
P 		1940
C 1685
(-1.2)
P 		2278.1
(0.7)
P 		2684.9
(1.9)
P 		3022.7
(3)
P 		1111.5
(-3)
P 		1376.2
(-2.2)
P 		1911
avr 2099.1
(-0) 		2179.8
(0.2) 		3032.9
(3) 		2594.7
(1.6) 		1395.3
(-2.3) 		1180.4
(-3) 		1853
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 856
1 2 3 4 range
A 1017.5
(3)
P 		412.2
(-1.2)
P 		341.9
(-1.7)
P 		161.8
(-3)
P 		856
B 960.3
(3)
P 		423.2
(-1.3)
P 		350
(-1.9)
P 		210.8
(-3)
P 		750
C 881.4
(3)
P 		491.7
(-0.3)
P 		469.8
(-0.4)
P 		165.5
(-3)
P 		716
avr 953.1
(3) 		442.4
(-1) 		387.2
(-1.4) 		179.4
(-3) 		774

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 553
1 2 3 4 5 6 range
A 463.5
(-0.1)
P 		723
(3)
P 		701.5
(2.7)
P 		596.7
(1.5)
P 		458.4
(-0.2)
P 		222.1
(-3)
P 		501
B 730
(2.1)
P 		741.7
(2.3)
P 		775.3
(3)
P 		638
(0.3)
P 		631.9
(0.2)
P 		467.1
(-3)
P 		308
C 624.6
(1.7)
P 		695.1
(3)
P 		683.4
(2.8)
P 		607.9
(1.4)
P 		359.7
(-3)
P 		460.7
(-1.2)
P 		335
avr 606
(1) 		719.9
(3) 		720.1
(3) 		614.2
(1.1) 		483.3
(-1.2) 		383.3
(-3) 		337
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191695_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.532
Sequence Type Exemplar sequence
Representative Public ID D2030.5 NCBI
Target Description D2030.5 /REP_DB=WormBase Gene ID /WP=CE09082 /TR=P90791 /GB=CAA98118.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=B.subtilis YQJC protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059719(11), AY594301(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059719 NCBI Caenorhabditis elegans D2030.5 (D2030.5) mRNA, complete cds. 11/11 None
AY594301 NCBI Caenorhabditis elegans mitochondrial methylmalonyl-CoA epimerase mRNA, complete cds; nuclear gene for mitochondrial product. 11/11 None
SNAP00000031274 ENSEMBL cdna:SNAP chromosome:CEL140:I:7590248:7591153:1 11/11 None
GENEFINDER00000031290 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7590248:7591153:1 11/11 None
D2030.5 ENSEMBL cdna:known chromosome:CEL140:I:7590233:7591476:1 gene:D2030.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7590178-7591084(+) 100.0 100.0
Public Domain and Genome References
Gene Title B.subtilis YQJC protein like
Gene Symbol mce-1
Ensembl D2030.5
Entrez Gene 172514 Entrez gene
SwissProt P90791 EMBL-EBI
WormBase CE09082 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597162_AT similar to Methylmalonyl-CoA epimerase, mitochondrial precursor (DL-methylmalonyl-CoA racemase) cfa
CANINE_2:CFA.4015.1.S1_A_AT similar to Methylmalonyl-CoA epimerase, mitochondrial precursor (DL-methylmalonyl-CoA racemase) cfa
CANINE_2:CFA.4015.2.A1_A_AT similar to Methylmalonyl-CoA epimerase, mitochondrial precursor (DL-methylmalonyl-CoA racemase) cfa
CANINE_2:CFA.4015.2.A1_S_AT similar to Methylmalonyl-CoA epimerase, mitochondrial precursor (DL-methylmalonyl-CoA racemase) cfa
CHICKEN:GGA.6114.1.S1_AT methylmalonyl CoA epimerase gga
HU35KSUBC:RC_H97986_AT methylmalonyl CoA epimerase hs
U133_X3P:HS.94949.0.A1_3P_AT methylmalonyl CoA epimerase hs
HG-U133_PLUS_2:226238_AT methylmalonyl CoA epimerase hs
HG-U133B:226238_AT methylmalonyl CoA epimerase hs
HG-U95B:55666_AT methylmalonyl CoA epimerase hs
MOUSE430_2:1438477_A_AT methylmalonyl CoA epimerase mm
MOE430A:1438477_A_AT methylmalonyl CoA epimerase mm
MOUSE430A_2:1438477_A_AT methylmalonyl CoA epimerase mm
MG-U74AV2:102022_AT methylmalonyl CoA epimerase mm
MU19KSUBA:TC20120_AT Methylmalonyl CoA epimerase, mRNA (cDNA clone MGC:48155 IMAGE:1479934) mm
RG-U34C:RC_AI172417_AT methylmalonyl CoA epimerase (predicted) rn
RAE230A:1376592_AT methylmalonyl CoA epimerase (predicted) rn
RAT230_2:1376592_AT methylmalonyl CoA epimerase (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA98118 Hypothetical protein D2030.5 [Caenorhabditis elegans] ref|NP_492120.1| D2030.5 [Caenorhabditis elegans] gb|AAT92095.1| mitochondrial methylmalonyl-CoA epimerase [Caenorhabditis elegans] 4.0E-88
blast CAE66623 Hypothetical protein CBG11959 [Caenorhabditis briggsae] 5.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR004360 EMBL-EBI Glyoxalase/Bleomycin resistance protein/dioxygenase domain 1.2E-31
Sequence
Target Sequence 
>C. ELEGANS:191695_AT
cgcccttgtcaattctgctaagctttcgctgtccacaagaaccatggcttcccatccatt
ggcaggacttctcggaaagttgaaccacgtcgccattgccacaccagatctcaagaaatc
atcggaattctacaagggcctcggagcaaaagttagcgaggctgtgccacaaccagaaca
tggagtctacactgtcttcgttgagcttccaaactcaaaaatcgagcttcttcatccatt
cggcgagaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCCTTGTCAATTCTGCTAAGCTT 217 257 36 Antisense
CAATTCTGCTAAGCTTTCGCTGTCC 77 181 45 Antisense
TGTCCACAAGAACCATGGCTTCCCA 584 557 65 Antisense
TTCCCATCCATTGGCAGGACTTCTC 526 697 84 Antisense
TCGGAAAGTTGAACCACGTCGCCAT 236 605 107 Antisense
CCATTGCCACACCAGATCTCAAGAA 674 269 128 Antisense
CATCGGAATTCTACAAGGGCCTCGG 448 211 155 Antisense
AGTTAGCGAGGCTGTGCCACAACCA 480 63 186 Antisense
AACATGGAGTCTACACTGTCTTCGT 168 137 212 Antisense
CTGTCTTCGTTGAGCTTCCAAACTC 103 237 227 Antisense
CTTCTTCATCCATTCGGCGAGAAAT 455 221 262 Antisense
Sequence Source Affymetrix Proprietary Database