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[191694_at]

Description C41G11.4 /REP_DB=WormBase Gene ID /WP=CE06949 /TR=Q18564 /GB=AAA85746.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 06      4grp_total > 30      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 201.3
(3)
A 		118.5
(-0.3)
A 		52.4
(-3)
A 		137.3
(0.4)
A 		149
B 183.3
(3)
A 		121.7
(-0.9)
A 		88.7
(-3)
A 		127.5
(-0.5)
A 		95
C 209.4
(3)
P 		104.1
(-0.7)
A 		38.1
(-3)
A 		160.7
(1.3)
A 		171
avr 198
(3) 		114.8
(-0.6) 		59.7
(-3) 		141.8
(0.6) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 156.9
(3)
A 		152.7
(2.7)
A 		91
(-2.2)
A 		88.6
(-2.4)
A 		83.7
(-2.8)
A 		81.2
(-3)
A 		76
B 132.8
(3)
A 		101.9
(0.7)
A 		96.5
(0.3)
A 		53.6
(-3)
A 		88.9
(-0.3)
A 		92.8
(-0)
A 		79
C 175.7
(3)
A 		102.6
(-1)
A 		120.6
(0)
A 		141.3
(1.1)
A 		85.3
(-1.9)
A 		64.8
(-3)
A 		111
avr 155.1
(3) 		119.1
(0.1) 		102.7
(-1.2) 		94.5
(-1.8) 		86
(-2.5) 		79.6
(-3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 73.3
(3)
A 		25.7
(-1.8)
A 		13.7
(-3)
A 		20.1
(-2.4)
A 		60
B 58.5
(3)
A 		30.1
(-1.5)
A 		20.5
(-3)
A 		27.2
(-1.9)
A 		38
C 69.3
(3)
P 		29.9
(-1.2)
A 		13.3
(-3)
A 		27.1
(-1.5)
A 		56
avr 67
(3) 		28.6
(-1.5) 		15.8
(-3) 		24.8
(-1.9) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 28.9
(-1.4)
A 		54.3
(3)
A 		19.8
(-3)
A 		22.5
(-2.5)
A 		25.3
(-2)
A 		19.8
(-3)
A 		35
B 46.2
(3)
A 		33.9
(0.7)
A 		23.4
(-1.3)
A 		14.2
(-3)
A 		36.1
(1.1)
A 		34.6
(0.8)
A 		32
C 65.1
(3)
A 		31.3
(-1.7)
A 		30.7
(-1.8)
A 		28.4
(-2.1)
A 		27.6
(-2.2)
A 		21.7
(-3)
A 		43
avr 46.7
(3) 		39.8
(1.3) 		24.6
(-2.3) 		21.7
(-3) 		29.7
(-1.1) 		25.4
(-2.1) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191694_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17239
Sequence Type Exemplar sequence
Representative Public ID C41G11.4 NCBI
Target Description C41G11.4 /REP_DB=WormBase Gene ID /WP=CE06949 /TR=Q18564 /GB=AAA85746.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171692(10), NM_171954(11), NM_001029281(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171692 NCBI Caenorhabditis elegans C41G11.4a (C41G11.4) mRNA, complete cds. 10/11 None
NM_171954 NCBI Caenorhabditis elegans C41G11.4b (C41G11.4) mRNA, complete cds. 11/11 None
NM_001029281 NCBI Caenorhabditis elegans C41G11.4c (C41G11.4) mRNA, complete cds. 10/11 None
GENEFINDER00000015678 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5733696:5743265:-1 11/11 None
SNAP00000015677 ENSEMBL cdna:SNAP chromosome:CEL140:X:5739567:5743639:-1 10/11 None
C41G11.4a ENSEMBL cdna:known chromosome:CEL140:X:5738747:5743265:-1 gene:C41G11.4 10/11 None
C41G11.4b ENSEMBL cdna:known chromosome:CEL140:X:5738749:5743208:-1 gene:C41G11.4 11/11 None
C41G11.4c ENSEMBL cdna:known chromosome:CEL140:X:5738895:5743208:-1 gene:C41G11.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5739837-5743208(-) 100.0 100.0
Public Domain and Genome References
Ensembl C41G11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA85746 Hypothetical protein C41G11.4a [Caenorhabditis elegans] ref|NP_741798.1| C41G11.4a [Caenorhabditis elegans] 0.0
blast AAM51526 Hypothetical protein C41G11.4b [Caenorhabditis elegans] ref|NP_741799.1| C41G11.4b [Caenorhabditis elegans] 0.0
blast CAE68795 Hypothetical protein CBG14743 [Caenorhabditis briggsae] 0.0
blast AAQ65208 Hypothetical protein C41G11.4c [Caenorhabditis elegans] ref|NP_001024452.1| C41G11.4c [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741798.1 6 22-44,65-87,102-124,145-164,253-275,447-469
NP_741799.1 6 22-44,65-87,102-124,145-164,253-275,468-490
NP_001024452.1 5 22-44,65-87,102-124,145-164,253-275
C41G11.4a 6 22-44,65-87,102-124,145-164,253-275,447-469
C41G11.4b 6 22-44,65-87,102-124,145-164,253-275,468-490
C41G11.4c 5 22-44,65-87,102-124,145-164,253-275
GENEFINDER00000015678 5 41-63,84-106,121-143,164-183,272-294
SNAP00000015677 5 48-70,91-113,128-150,171-190,279-301
Sequence
Target Sequence 
>C. ELEGANS:191694_AT
gacattttctgctgctgtaaacgtgcaaggcaacacgagtctccaatcgagtcaaatgtt
acacaagaatccgacaatttgatggcccgtgttccttctaaaacgaaacgactgcagaac
atcgcgccggaaggtaaaagttgcgatatggaacgtcggcgagctgcatcggtagatgta
ccaatgagaattaaaaactcatctagtcttacagtatgcattgacgaaaatggctcagct
actgcagcgacaagacctgaagtgaccccacaagagcaggaacctgaaaccagaacgcaa
gctttcaagcgtcgagtgtggaatttcctgttagacctgttccacaacggatcagaaggt
tcagttcatttcaacggacataaaacagagcttcggttaccaaacctgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATTTTCTGCTGCTGTAAACGTG 334 371 889 Antisense
GGCAACACGAGTCTCCAATCGAGTC 56 533 917 Antisense
GAATCCGACAATTTGATGGCCCGTG 556 329 955 Antisense
TGCAGAACATCGCGCCGGAAGGTAA 594 573 1001 Antisense
TATGGAACGTCGGCGAGCTGCATCG 438 655 1035 Antisense
GCTCAGCTACTGCAGCGACAAGACC 132 297 1121 Antisense
AGACCTGAAGTGACCCCACAAGAGC 665 69 1141 Antisense
GAACGCAAGCTTTCAAGCGTCGAGT 216 347 1181 Antisense
TGTGGAATTTCCTGTTAGACCTGTT 333 495 1205 Antisense
TAGACCTGTTCCACAACGGATCAGA 330 651 1220 Antisense
CAGAGCTTCGGTTACCAAACCTGAC 430 193 1274 Antisense
Sequence Source Affymetrix Proprietary Database