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[191693_at] glutathione S-transferase

Description D1053.1 /REP_DB=WormBase Gene ID /WP=CE03099 /TR=SW:Q18938 /GB=CAA91449.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      4grp_highest_8_8 > 16      4grp_high_8_8 > 53      6grp_highest_nonorm > 34      6grp_total > 51      4grp_total > 59      6grp_highest_sub > 03_04      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1754
1 2 3 4 range
A 1786.7
(0.2)
P 		2593.8
(3)
P 		2524.2
(2.8)
P 		862.3
(-3)
P 		1732
B 1801.6
(0.4)
P 		2420.4
(2.6)
P 		2520.2
(3)
P 		839.7
(-3)
P 		1681
C 1861
(0.6)
P 		2445.3
(3)
P 		2299.1
(2.4)
P 		957.4
(-3)
P 		1488
avr 1816.4
(0.5) 		2486.5
(3) 		2447.8
(2.9) 		886.5
(-3) 		1600

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3530
1 2 3 4 5 6 range
A 1868.8
(-0.2)
P 		2695.6
(1.4)
P 		3437.9
(2.9)
P 		3481.5
(3)
P 		1451.7
(-1.1)
P 		492.8
(-3)
P 		2989
B 1979.1
(-0.4)
P 		2195.2
(-0)
P 		3861.4
(3)
P 		2945.9
(1.3)
P 		1500.8
(-1.3)
P 		568.3
(-3)
P 		3293
C 1639.7
(-1.1)
P 		2414.5
(0.2)
P 		4022.6
(3)
P 		3756.4
(2.5)
P 		1230
(-1.8)
P 		556.4
(-3)
P 		3466
avr 1829.2
(-0.6) 		2435.1
(0.5) 		3774
(3) 		3394.6
(2.3) 		1394.2
(-1.4) 		539.2
(-3) 		3235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 675
1 2 3 4 range
A 650.5
(2.9)
P 		563
(1.9)
P 		659.9
(3)
P 		126.2
(-3)
P 		534
B 574.5
(2.7)
P 		597.8
(3)
P 		584
(2.8)
P 		178.9
(-3)
P 		419
C 616
(1.3)
P 		703
(2.1)
P 		801.3
(3)
P 		161.4
(-3)
P 		640
avr 613.7
(2.2) 		621.3
(2.3) 		681.7
(3) 		155.5
(-3) 		526

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 904
1 2 3 4 5 6 range
A 344.5
(-1.4)
P 		958.7
(3)
P 		748.7
(1.5)
P 		883
(2.5)
P 		438.1
(-0.7)
P 		120
(-3)
P 		839
B 688.6
(0.9)
P 		730.7
(1.3)
P 		937.7
(3)
P 		780.3
(1.7)
P 		609.7
(0.3)
P 		211.9
(-3)
P 		726
C 607.8
(0)
P 		736.7
(0.9)
P 		1023.8
(3)
P 		755.4
(1.1)
P 		398
(-1.5)
P 		186.2
(-3)
P 		838
avr 547
(0.1) 		808.7
(2.2) 		903.4
(3) 		806.2
(2.2) 		481.9
(-0.5) 		172.7
(-3) 		731
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191693_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16320
Sequence Type Exemplar sequence
Representative Public ID D1053.1 NCBI
Target Description D1053.1 /REP_DB=WormBase Gene ID /WP=CE03099 /TR=SW:Q18938 /GB=CAA91449.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077561(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077561 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-42) (gst-42) mRNA, complete cds. 11/11 None
SNAP00000035552 ENSEMBL cdna:SNAP chromosome:CEL140:X:11726415:11727717:-1 9/11 None
GENEFINDER00000035555 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11726415:11727717:-1 11/11 None
D1053.1 ENSEMBL cdna:known chromosome:CEL140:X:11726187:11727717:-1 gene:D1053.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11726414-11727717(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-42
Ensembl D1053.1
Entrez Gene 183911 Entrez gene
SwissProt Q18938 EMBL-EBI
WormBase CE03099 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:13564_AT glutathione S-transferase zeta 1 (GSTZ1) (GST18) at
ATH1-121501:266181_AT glutathione S-transferase zeta 1 (GSTZ1) (GST18) at
CANINE_2:CFAAFFX.26294.1.S1_AT similar to glutathione transferase zeta 1 isoform 1 cfa
CANINE_2:CFAAFFX.26294.1.S1_S_AT similar to glutathione transferase zeta 1 isoform 1 cfa
CANINE_2:CFAAFFX.26298.1.S1_AT similar to glutathione transferase zeta 1 isoform 1 cfa
DROSOPHILA_2:1624580_AT dm
DROSGENOME1:141293_AT dm
CHICKEN:GGA.1022.2.S1_A_AT glutathione transferase zeta 1 (maleylacetoacetate isomerase) gga
HG-U95AV2:1212_AT glutathione transferase zeta 1 (maleylacetoacetate isomerase) hs
HC-G110:1212_AT glutathione transferase zeta 1 (maleylacetoacetate isomerase) hs
HG-U133_PLUS_2:209531_AT glutathione transferase zeta 1 (maleylacetoacetate isomerase) hs
HG-U133A_2:209531_AT glutathione transferase zeta 1 (maleylacetoacetate isomerase) hs
HG-U133A:209531_AT glutathione transferase zeta 1 (maleylacetoacetate isomerase) hs
HG-FOCUS:209531_AT glutathione transferase zeta 1 (maleylacetoacetate isomerase) hs
HUGENEFL:U86529_AT glutathione transferase zeta 1 (maleylacetoacetate isomerase) hs
U133_X3P:G12655190_3P_AT glutathione transferase zeta 1 (maleylacetoacetate isomerase) hs
MOUSE430_2:1427552_A_AT glutathione transferase zeta 1 (maleylacetoacetate isomerase) mm
MOE430A:1427552_A_AT glutathione transferase zeta 1 (maleylacetoacetate isomerase) mm
MOUSE430A_2:1427552_A_AT glutathione transferase zeta 1 (maleylacetoacetate isomerase) mm
MU11KSUBA:AA244513_S_AT glutathione transferase zeta 1 (maleylacetoacetate isomerase) mm
MG-U74AV2:160350_AT glutathione transferase zeta 1 (maleylacetoacetate isomerase) mm
MU19KSUBB:TC31228_AT Glutathione transferase zeta 1 (maleylacetoacetate isomerase), mRNA (cDNA clone MGC:18309 IMAGE:4168439) mm
MU19KSUBB:TC31228_G_AT Glutathione transferase zeta 1 (maleylacetoacetate isomerase), mRNA (cDNA clone MGC:18309 IMAGE:4168439) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9072 aromatic amino acid family metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91449 Hypothetical protein D1053.1 [Caenorhabditis elegans] ref|NP_509962.1| Glutathione S-Transferase family member (gst-42) [Caenorhabditis elegans] sp|Q18938|MAAI_CAEEL Probable maleylacetoacetate isomerase (MAAI) 1.0E-118
blast CAA91449 Hypothetical protein D1053.1 [Caenorhabditis elegans] ref|NP_509962.1| Glutathione S-Transferase family member (gst-42) [Caenorhabditis elegans] sp|Q18938|MAAI_CAEEL Probable maleylacetoacetate isomerase (MAAI) 1.0E-113
blast CAE57330 Hypothetical protein CBG00257 [Caenorhabditis briggsae] 1.0E-106
blast CAE57330 Hypothetical protein CBG00257 [Caenorhabditis briggsae] 1.0E-102
blast AAF36004 Glutathione s-transferase protein 43 [Caenorhabditis elegans] ref|NP_491070.1| Glutathione S-Transferase family member (gst-43) [Caenorhabditis elegans] 3.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.7E-5
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 1.0E-21
Sequence
Target Sequence 
>C. ELEGANS:191693_AT
ggagatcatcgtgctcatggagagttcgcatcgcgcttgctttgaaaaacgtggactacg
aatacaaaactgtcgacttgctgtccgaagaggctaagagcaaactgaaagaaatcaacc
cagctgcaaaagtaccaacatttgttgtggatggtcaagtaattactgaaagtcttgcga
ttattgagtatttggaagaaacgcatccagacgttccacttttgccaaaagatccaatca
agagagctcacgctagagctatttctcttttggttgcttctggaattcaacctcttcaca
atttgaaggttcttcaacttttgaataaaaaagaagcaggattcggaggacagtttgcca
aacagtttgttgtcgaaggtctcactgctcttgaaattcttctaaagcaacattctggga
agtatgctgtcggagatgacgtcacgattgcggatctctccatcccgccacttatctact
cagctaaccgattcaacctcgatttgtcgccatacccaacagtgaatcgtatcaatgaga
ctcttgctgatatcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGATCATCGTGCTCATGGAGAGT 570 517 47 Antisense
TTCGCATCGCGCTTGCTTTGAAAAA 193 697 71 Antisense
AAAACTGTCGACTTGCTGTCCGAAG 368 131 112 Antisense
AGAAACGCATCCAGACGTTCCACTT 264 73 243 Antisense
TGCTTCTGGAATTCAACCTCTTCAC 569 579 321 Antisense
GAAGGTCTCACTGCTCTTGAAATTC 439 335 421 Antisense
ATGACGTCACGATTGCGGATCTCTC 483 45 482 Antisense
TCTACTCAGCTAACCGATTCAACCT 650 613 521 Antisense
CGATTCAACCTCGATTTGTCGCCAT 138 249 535 Antisense
TCGCCATACCCAACAGTGAATCGTA 315 599 553 Antisense
CAATGAGACTCTTGCTGATATCCCC 369 183 579 Antisense
Sequence Source Affymetrix Proprietary Database