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[191691_at] Transthyretin-like family

Description C40H1.5 /REP_DB=WormBase Gene ID /WP=CE00113 /TR=SW:Q03575 /GB=CAA79556.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 36      6grp_total > 75      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1842
1 2 3 4 range
A 2468
(3)
P 		1368.4
(-1.4)
P 		958.2
(-3)
P 		1491.7
(-0.9)
P 		1510
B 2729.9
(3)
P 		1149.5
(-2.2)
P 		902.1
(-3)
P 		1174.8
(-2.1)
P 		1828
C 2668.9
(3)
P 		1158.1
(-2.1)
P 		887.5
(-3)
P 		1263.7
(-1.7)
P 		1781
avr 2622.3
(3) 		1225.3
(-1.9) 		915.9
(-3) 		1310.1
(-1.6) 		1706

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2032
1 2 3 4 5 6 range
A 4403.5
(2.8)
P 		2881.4
(-3)
P 		4446.4
(3)
P 		4106.6
(1.7)
P 		3935.8
(1)
P 		3886.4
(0.9)
P 		1565
B 4120.1
(0)
P 		3616.7
(-3)
P 		4619.6
(3)
P 		3707.1
(-2.5)
P 		4266.8
(0.9)
P 		4238.7
(0.7)
P 		1003
C 3863.9
(-1.3)
P 		3634.4
(-2.2)
P 		3451.6
(-3)
P 		4913.7
(3)
P 		3634.9
(-2.2)
P 		4819.2
(2.6)
P 		1462
avr 4129.2
(1.8) 		3377.5
(-3) 		4172.5
(2.1) 		4242.5
(2.5) 		3945.8
(0.6) 		4314.8
(3) 		937
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 690
1 2 3 4 range
A 898.6
(3)
P 		297
(-2.3)
P 		250.5
(-2.7)
P 		218.4
(-3)
P 		680
B 870.5
(3)
P 		283.9
(-2.3)
P 		209
(-3)
P 		250.4
(-2.6)
P 		662
C 883.5
(3)
P 		333
(-1.9)
P 		309.3
(-2.1)
P 		213.1
(-3)
P 		670
avr 884.2
(3) 		304.6
(-2.3) 		256.3
(-2.7) 		227.3
(-3) 		657

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 922
1 2 3 4 5 6 range
A 811.7
(-3)
P 		1024.8
(0.4)
P 		968.3
(-0.5)
P 		1041.5
(0.7)
P 		1187.7
(3)
P 		946.2
(-0.9)
P 		376
B 1433.6
(0.6)
P 		1203.9
(-1.2)
P 		1121.8
(-1.9)
P 		981.9
(-3)
P 		1733.6
(3)
P 		1580.6
(1.8)
P 		752
C 1432.2
(1.5)
P 		1109
(-1.1)
P 		878.5
(-3)
P 		988.1
(-2.1)
P 		1176.2
(-0.6)
P 		1613.3
(3)
P 		735
avr 1225.8
(0.6) 		1112.6
(-1.1) 		989.5
(-3) 		1003.8
(-2.8) 		1365.8
(2.8) 		1380
(3) 		391
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191691_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7054
Sequence Type Exemplar sequence
Representative Public ID C40H1.5 NCBI
Target Description C40H1.5 /REP_DB=WormBase Gene ID /WP=CE00113 /TR=SW:Q03575 /GB=CAA79556.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066653(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066653 NCBI Caenorhabditis elegans C40H1.5 (C40H1.5) mRNA, complete cds. 11/11 None
SNAP00000000787 ENSEMBL cdna:SNAP chromosome:CEL140:III:9330215:9330772:1 11/11 None
GENEFINDER00000000797 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9330215:9330772:1 11/11 None
C40H1.5 ENSEMBL cdna:known chromosome:CEL140:III:9330215:9330825:1 gene:C40H1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9330210-9330768(+) 100.0 100.0
Public Domain and Genome References
Gene Title Transthyretin-like family
Ensembl C40H1.5
Entrez Gene 176312 Entrez gene
SwissProt Q03575 EMBL-EBI
WormBase CE00113 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA79556 Hypothetical protein C40H1.5 [Caenorhabditis elegans] ref|NP_499054.1| C40H1.5 [Caenorhabditis elegans] sp|Q03575|YLF5_CAEEL Hypothetical UPF0205 protein C40H1.5 in chromosome III precursor 2.0E-77
blast CAE65237 Hypothetical protein CBG10120 [Caenorhabditis briggsae] 1.0E-72
blast AAK39307 Hypothetical protein T28B4.3 [Caenorhabditis elegans] ref|NP_509110.1| T28B4.3 [Caenorhabditis elegans] 6.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 9.8E-72
Sequence
Target Sequence 
>C. ELEGANS:191691_AT
agcttataatccttttgtgccttgttgcctcaagctatgctttaattggaaatacccaat
cggctggagtacgtggaaaactgatctgcaatggaaaaccagctgttggagttttggtca
agttgtatgatgatgatagaggaatcgatgccgatgatttgatggcttctggaaagacca
atggcaacggagattttgaaatttctggacacgaagatgaagtgactccaatcgacccaa
aacttaacatttaccatgactgcaatgatggaattaagccctgccaacgcaagttcacta
tcaagatcccagatagctacatcaacaagggaaagactgtccgtaatatttacgatgccg
gagtcattcaacttgctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTTATAATCCTTTTGTGCCTTGT 451 79 17 Antisense
TGCCTTGTTGCCTCAAGCTATGCTT 559 583 34 Antisense
ATACCCAATCGGCTGGAGTACGTGG 349 23 68 Antisense
CGATGCCGATGATTTGATGGCTTCT 302 249 162 Antisense
GATGGCTTCTGGAAAGACCAATGGC 171 407 177 Antisense
AGATGAAGTGACTCCAATCGACCCA 366 67 231 Antisense
CTCCAATCGACCCAAAACTTAACAT 192 229 242 Antisense
TGATGGAATTAAGCCCTGCCAACGC 377 563 282 Antisense
CCCTGCCAACGCAAGTTCACTATCA 179 259 295 Antisense
AAGATCCCAGATAGCTACATCAACA 480 155 319 Antisense
ATGCCGGAGTCATTCAACTTGCTGG 657 41 371 Antisense
Sequence Source Affymetrix Proprietary Database