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[191690_at] 7TM chemoreceptor, str family

Description C05E4.13 /REP_DB=WormBase Gene ID /WP=CE07946 /GEN=str-262 /TR=O17361 /GB=AAB71282.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 56      4grp_total > 25      6grp_cgc > 47      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 7.2
(-3)
A 		8.7
(-2.7)
A 		17.4
(-1.1)
A 		40.1
(3)
A 		33
B 5.8
(-3)
A 		66.6
(3)
A 		41.1
(0.5)
A 		34.6
(-0.2)
A 		61
C 5.1
(-3)
A 		42.1
(0.4)
A 		23.9
(-1.3)
A 		71.3
(3)
A 		66
avr 6
(-3) 		39.1
(1.7) 		27.5
(0) 		48.7
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 32.9
(0.3)
A 		37.9
(0.9)
A 		23.7
(-0.8)
A 		9.7
(-2.5)
A 		5.7
(-3)
A 		55.5
(3)
A 		50
B 5
(-3)
A 		6.6
(-2.8)
A 		19.7
(-1.6)
A 		12.8
(-2.3)
A 		9.3
(-2.6)
A 		68.8
(3)
A 		64
C 10
(-2.5)
A 		49.4
(3)
A 		32.1
(0.6)
A 		6.8
(-3)
A 		35
(1)
A 		47.9
(2.8)
A 		43
avr 16
(-2.2) 		31.3
(-0.3) 		25.2
(-1.1) 		9.8
(-3) 		16.7
(-2.1) 		57.4
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.6
(-2)
A 		1.9
(-3)
A 		4.6
(1.1)
A 		5.9
(3)
A 		4
B 1.8
(-3)
A 		16.4
(3)
A 		9.5
(0.2)
A 		7.4
(-0.7)
A 		15
C 1.7
(-3)
A 		12.1
(3)
A 		8.3
(0.8)
A 		12
(2.9)
A 		10
avr 2
(-3) 		10.1
(3) 		7.5
(1.1) 		8.4
(1.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 6.1
(-0.8)
A 		13.5
(3)
A 		5.2
(-1.2)
A 		2.5
(-2.6)
A 		1.7
(-3)
A 		13.5
(3)
A 		12
B 1.7
(-3)
A 		2.2
(-2.9)
A 		4.8
(-2.2)
A 		3.4
(-2.6)
A 		3.8
(-2.5)
A 		25.7
(3)
A 		24
C 3.7
(-2.1)
A 		15.1
(2.6)
A 		8.2
(-0.2)
A 		1.4
(-3)
A 		11.3
(1.1)
A 		16
(3)
A 		15
avr 3.8
(-2.5) 		10.3
(-0) 		6.1
(-1.6) 		2.4
(-3) 		5.6
(-1.8) 		18.4
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191690_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15528
Sequence Type Exemplar sequence
Representative Public ID C05E4.13 NCBI
Target Description C05E4.13 /REP_DB=WormBase Gene ID /WP=CE07946 /GEN=str-262 /TR=O17361 /GB=AAB71282.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070913(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070913 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-262) (str-262) mRNA, complete cds. 11/11 None
SNAP00000009764 ENSEMBL cdna:SNAP chromosome:CEL140:V:749739:752234:-1 9/11 None
GENEFINDER00000009774 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:751156:752234:-1 11/11 None
C05E4.13 ENSEMBL cdna:known chromosome:CEL140:V:751156:752609:-1 gene:C05E4.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:751155-752609(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-262
Ensembl C05E4.13
Entrez Gene 192047 Entrez gene
SwissProt O17361 EMBL-EBI
WormBase CE07946 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71282 Seven tm receptor protein 262 [Caenorhabditis elegans] ref|NP_503314.1| Seven TM Receptor family member (str-262) [Caenorhabditis elegans] 1.0E-177
blast AAB71282 Seven tm receptor protein 262 [Caenorhabditis elegans] ref|NP_503314.1| Seven TM Receptor family member (str-262) [Caenorhabditis elegans] 1.0E-133
blast AAG24185 Seven tm receptor protein 256 [Caenorhabditis elegans] ref|NP_503223.1| Seven TM Receptor family member (str-256) [Caenorhabditis elegans] 1.0E-101
blast AAD14695 Seven tm receptor protein 258 [Caenorhabditis elegans] ref|NP_503686.1| Seven TM Receptor family member (str-258) [Caenorhabditis elegans] 3.0E-99
blast AAB71282 Seven tm receptor protein 262 [Caenorhabditis elegans] ref|NP_503314.1| Seven TM Receptor family member (str-262) [Caenorhabditis elegans] 7.0E-86
blast T32197 hypothetical protein T01G6.9 - Caenorhabditis elegans 1.0E-71
blast AAG24185 Seven tm receptor protein 256 [Caenorhabditis elegans] ref|NP_503223.1| Seven TM Receptor family member (str-256) [Caenorhabditis elegans] 2.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.1E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.0E-10
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.1E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503314.1 7 6-28,35-57,93-115,128-150,207-229,255-277,287-309
C05E4.13 7 6-28,35-57,93-115,128-150,207-229,255-277,287-309
SNAP00000009764 4 7-24,79-101,127-149,159-181
GENEFINDER00000009774 4 21-43,58-80,133-155,187-209
Sequence
Target Sequence 
>C. ELEGANS:191690_AT
gtggtattattctgtcggctgatgcggaaacggatcggttcatgagagaaaattatctaa
aagtaattaaaaatcaaacaaatcttgaagacctctattacatgggcccgtttttctggc
cgaaacttgaaaattcaataacggaaacgtattttagttggaaaggtgcggaaggctcat
tgatagttatggggtcaattggtctctctagctcgatcatgatattcttcggaattaagg
gatatataagtatgaacaatctactcgcaattacaagcaactcggaacagtttcaaaata
ttcaaaagcagcttttccaagctctatgcattcaaaccataatcccagtagttttaatgc
atattccggcttctgcaatttatatcaccattttcttcgagaaatcttcggtaatcgtcg
gagaaactttgagcttaacgatcgcgatgtaccctgcaatgaatccgcttccaaccattt
atatagttcaaagctaccgaaaagccgtgaaagattattttatttcaataaaaaatacac
ttttgaaaaagccaacggtgattcctgtgtcgcatactgttcaggtcataccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGTATTATTCTGTCGGCTGATGC 672 487 452 Antisense
TGAAGACCTCTATTACATGGGCCCG 283 573 537 Antisense
TTACATGGGCCCGTTTTTCTGGCCG 308 681 549 Antisense
TATGGGGTCAATTGGTCTCTCTAGC 620 655 639 Antisense
GTCTCTCTAGCTCGATCATGATATT 222 469 653 Antisense
GCTTTTCCAAGCTCTATGCATTCAA 357 305 762 Antisense
GAGCTTAACGATCGCGATGTACCCT 275 387 882 Antisense
GCGATGTACCCTGCAATGAATCCGC 465 289 895 Antisense
AATCCGCTTCCAACCATTTATATAG 694 167 913 Antisense
AAAGCCAACGGTGATTCCTGTGTCG 665 121 999 Antisense
GTCGCATACTGTTCAGGTCATACCC 706 473 1020 Antisense
Sequence Source Affymetrix Proprietary Database