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[191689_s_at] UDP-glucuronosyl transferase

Description C08B6.1 /REP_DB=WormBase Gene ID /WP=CE05238 /TR=Q17813 /GB=CAA96584.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyl transferase
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 54      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 76      6grp_total > 55      4grp_total > 50      6grp_cgc > 35      6grp_cgc_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1410
1 2 3 4 range
A 951.1
(-1.7)
P 		1944.9
(3)
P 		1275.9
(-0.2)
P 		683.3
(-3)
P 		1262
B 922.5
(-0.9)
P 		1666.6
(3)
P 		1313.4
(1.1)
P 		535.3
(-3)
P 		1131
C 927.6
(-1.5)
P 		1420.8
(2.5)
P 		1485.5
(3)
P 		738.2
(-3)
P 		747
avr 933.7
(-1.4) 		1677.4
(3) 		1358.3
(1.1) 		652.3
(-3) 		1025

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 902
1 2 3 4 5 6 range
A 1126.3
(-0.3)
P 		981.5
(-1.4)
P 		1606.1
(3)
P 		1261.1
(0.6)
P 		746.6
(-3)
P 		1039.7
(-1)
P 		860
B 1330
(1.3)
P 		1276.2
(0.7)
P 		1496
(3)
P 		1085.7
(-1.3)
P 		921.2
(-3)
P 		1426.3
(2.3)
P 		575
C 1075.3
(0.4)
P 		1358.1
(3)
P 		992.9
(-0.4)
P 		1101.6
(0.6)
P 		704.3
(-3)
P 		1230.1
(1.8)
P 		654
avr 1177.2
(1) 		1205.3
(1.3) 		1365
(3) 		1149.5
(0.7) 		790.7
(-3) 		1232
(1.6) 		574
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 418
1 2 3 4 range
A 346.3
(1.6)
P 		422.2
(3)
P 		333.5
(1.3)
P 		100
(-3)
P 		322
B 294.2
(0.6)
P 		411.6
(3)
P 		304.3
(0.8)
P 		114.1
(-3)
P 		298
C 307.1
(-0.2)
P 		408.5
(1.3)
P 		517.8
(3)
P 		124.5
(-3)
P 		393
avr 315.9
(1) 		414.1
(3) 		385.2
(2.4) 		112.9
(-3) 		301

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 324
1 2 3 4 5 6 range
A 207.6
(-3)
P 		349.1
(3)
P 		349.8
(3)
P 		319.8
(1.7)
P 		225.3
(-2.3)
P 		253.1
(-1.1)
P 		142
B 462.8
(1.3)
P 		424.8
(0.4)
P 		363.3
(-1.1)
P 		287.6
(-3)
P 		374.3
(-0.9)
P 		531.9
(3)
P 		244
C 398.6
(2.5)
P 		414.4
(3)
P 		252.7
(-2)
P 		221.5
(-3)
P 		227.9
(-2.8)
P 		411.8
(2.9)
P 		193
avr 356.3
(0.9) 		396.1
(2.9) 		321.9
(-0.8) 		276.3
(-3) 		275.8
(-3) 		398.9
(3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191689_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12016
Sequence Type Exemplar sequence
Representative Public ID C08B6.1 NCBI
Target Description C08B6.1 /REP_DB=WormBase Gene ID /WP=CE05238 /TR=Q17813 /GB=CAA96584.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyl transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073196(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073196 NCBI Caenorhabditis elegans C08B6.1 (C08B6.1) mRNA, complete cds. 11/11 None
SNAP00000004947 ENSEMBL cdna:SNAP chromosome:CEL140:V:10105328:10107273:-1 10/11 None
GENEFINDER00000004971 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10104849:10107479:-1 10/11 None
C08B6.1 ENSEMBL cdna:known chromosome:CEL140:V:10105183:10107523:-1 gene:C08B6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10105209-10107479(-) 96.82 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyl transferase
Gene Symbol ugt-17
Ensembl C08B6.1
Entrez Gene 179406 Entrez gene
SwissProt Q17813 EMBL-EBI
WormBase CE31296 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96584 Hypothetical protein C08B6.1 [Caenorhabditis elegans] ref|NP_505597.2| C08B6.1 [Caenorhabditis elegans] 0.0
blast CAE56881 Hypothetical protein CBG24720 [Caenorhabditis briggsae] 0.0
blast CAE56882 Hypothetical protein CBG24721 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 6.7E-33
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.3E-18
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.3E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505597.2 1 497-519
C08B6.1 1 497-519
Sequence
Target Sequence 
>C. ELEGANS:191689_S_AT
gactacttggatgcctcaaagtgatttattagctgacaatcgactgagcctgtttgtaac
tcatggaggtttgggaagttctattgaacttgcttatcaaggaacgcctgcagttgttat
cccattgatggctgatcagccgagaaacgctcacatgctaacgcgtcacggcggagctat
acaactagacaagacaaatcttgataatccacaaatgattcgtgacgcaattaaaactat
tttagataatgatagctatacagaaaacgccagaaaactagcacagattttggaggatca
accatatactccagccgaagttgtcctaaagcattgtgactttgcagtaaaatttggggt
attggacactttacagtcagaaggaagaaaattgaatgtatttcaattctattcgtatga
tattttggttgttgtttgttttttaatcatcactgttgtcgtttttatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTACTTGGATGCCTCAAAGTGAT 101 373 1236 Antisense
GCTGACAATCGACTGAGCCTGTTTG 1 297 1267 Antisense
GCTTATCAAGGAACGCCTGCAGTTG 120 305 1327 Antisense
ATCCCATTGATGGCTGATCAGCCGA 274 37 1354 Antisense
GATCAGCCGAGAAACGCTCACATGC 441 419 1369 Antisense
TCACATGCTAACGCGTCACGGCGGA 197 627 1386 Antisense
GTCACGGCGGAGCTATACAACTAGA 581 463 1400 Antisense
TCCACAAATGATTCGTGACGCAATT 291 587 1443 Antisense
GAGGATCAACCATATACTCCAGCCG 673 403 1528 Antisense
ACTCCAGCCGAAGTTGTCCTAAAGC 445 99 1543 Antisense
AATCATCACTGTTGTCGTTTTTATC 46 171 1680 Antisense
Sequence Source Affymetrix Proprietary Database