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[191688_at] Thrombospondin type 1 domain

Description F15B9.8 /REP_DB=WormBase Gene ID /WP=CE20686 /TR=Q9XVU5 /GB=CAB01426.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Thrombospondin type 1 domain
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 44      6grp_total > 82      4grp_total > 56      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4353
1 2 3 4 range
A 110
(-3)
P 		3195.2
(1.5)
P 		4244.6
(3)
P 		250.7
(-2.8)
P 		4135
B 109.5
(-3)
P 		3085.6
(1.1)
P 		4441.6
(3)
P 		202.3
(-2.9)
P 		4332
C 88.2
(-3)
P 		2777.1
(1)
P 		4114
(3)
P 		312.7
(-2.7)
P 		4026
avr 102.6
(-3) 		3019.3
(1.2) 		4266.7
(3) 		255.2
(-2.8) 		4164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2968
1 2 3 4 5 6 range
A 324.3
(-3)
P 		2440.1
(3)
P 		2028.1
(1.8)
P 		2434.6
(3)
P 		2300.2
(2.6)
P 		1150.2
(-0.7)
P 		2116
B 384.6
(-3)
P 		2541.7
(1.6)
P 		2094.4
(0.6)
P 		2418.5
(1.3)
P 		3196.8
(3)
P 		1266.3
(-1.1)
P 		2812
C 228.5
(-3)
P 		2595.2
(2.3)
P 		1819.3
(0.6)
P 		2759.5
(2.7)
P 		2898.8
(3)
P 		913.3
(-1.5)
P 		2670
avr 312.5
(-3) 		2525.7
(2.3) 		1980.6
(1) 		2537.5
(2.4) 		2798.6
(3) 		1109.9
(-1.1) 		2486
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1405
1 2 3 4 range
A 40.1
(-3)
P 		693.6
(0.7)
P 		1109.6
(3)
P 		36.7
(-3)
P 		1073
B 34.9
(-3)
P 		762.1
(1.4)
P 		1029.2
(3)
P 		43.1
(-3)
P 		994
C 29.2
(-3)
P 		798.4
(0.3)
P 		1433.9
(3)
P 		52.7
(-2.9)
P 		1405
avr 34.7
(-3) 		751.4
(0.7) 		1190.9
(3) 		44.2
(-3) 		1156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1239
1 2 3 4 5 6 range
A 59.8
(-3)
P 		867.8
(3)
P 		441.7
(-0.2)
P 		617.5
(1.1)
P 		694.1
(1.7)
P 		280
(-1.4)
P 		808
B 133.8
(-3)
P 		846
(0.7)
P 		508.6
(-1.1)
P 		640.6
(-0.4)
P 		1298.8
(3)
P 		472.2
(-1.3)
P 		1165
C 84.7
(-3)
P 		791.9
(2)
P 		463
(-0.3)
P 		554.9
(0.3)
P 		938
(3)
P 		305.7
(-1.4)
P 		853
avr 92.8
(-3) 		835.2
(2) 		471.1
(-0.4) 		604.3
(0.5) 		977
(3) 		352.6
(-1.2) 		884
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191688_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14404
Sequence Type Exemplar sequence
Representative Public ID F15B9.8 NCBI
Target Description F15B9.8 /REP_DB=WormBase Gene ID /WP=CE20686 /TR=Q9XVU5 /GB=CAB01426.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Thrombospondin type 1 domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073848(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073848 NCBI Caenorhabditis elegans F15B9.8 (F15B9.8) mRNA, complete cds. 11/11 None
GENEFINDER00000032646 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12991152:12994635:1 11/11 None
F15B9.8 ENSEMBL cdna:known chromosome:CEL140:V:12991147:12994775:1 gene:F15B9.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032627 3/11 Cross Hyb Matching Probes None
SNAP00000032628 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12991151-12994635(+) 100.0 100.0
Public Domain and Genome References
Gene Title Thrombospondin type 1 domain
Ensembl F15B9.8
Entrez Gene 179784 Entrez gene
SwissProt Q9XVU5 EMBL-EBI
WormBase CE20686 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01426 Hypothetical protein F15B9.8 [Caenorhabditis elegans] ref|NP_506249.1| F15B9.8 [Caenorhabditis elegans] 8.0E-85
blast CAE64701 Hypothetical protein CBG09484 [Caenorhabditis briggsae] 7.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR000884 EMBL-EBI Thrombospondin, type I 1.4E-7
Sequence
Target Sequence 
>C. ELEGANS:191688_AT
cccttatttcagcgattccagttgctgttaatatagatgatcaagacgcagtgaatttgg
gagcttacgatcgagcacgatttgatctcgtagaaagtttccaccctcttcagccagctt
ctgcagttacaaacgatcaaattgctgaagtgcgtgccaaagcagctggtgtgaggcaaa
acgaagcttcaatttcaattgacttgccaacacaaatgctttccgggagttcgggaagaa
ttccagaaagattggcgttcggagaatggactgagtggacttcatggtcaatgtgccaaa
atggagagagatcaagagttcgtacatgtgtttccagaaaaccagctcttcgtgttgtat
gccacggagatgctattgagattgagaaatgctacgttgacgccggagaaggtcatattc
cagttgccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTTATTTCAGCGATTCCAGTTGC 540 259 44 Antisense
TGGGAGCTTACGATCGAGCACGATT 691 553 101 Antisense
GATCTCGTAGAAAGTTTCCACCCTC 665 373 127 Antisense
AGCCAGCTTCTGCAGTTACAAACGA 62 83 155 Antisense
GAAGTGCGTGCCAAAGCAGCTGGTG 74 337 190 Antisense
TTGCCAACACAAATGCTTTCCGGGA 303 699 247 Antisense
GTGGACTTCATGGTCAATGTGCCAA 263 491 318 Antisense
AGAGTTCGTACATGTGTTTCCAGAA 388 69 358 Antisense
AAAACCAGCTCTTCGTGTTGTATGC 460 131 381 Antisense
GAAATGCTACGTTGACGCCGGAGAA 383 361 429 Antisense
GAGAAGGTCATATTCCAGTTGCCGC 255 391 449 Antisense
Sequence Source Affymetrix Proprietary Database