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[191687_at] Protein tyrosine phosphatase

Description K03H1.8 /REP_DB=WormBase Gene ID /WP=CE00572 /TR=Q21197 /GB=CAA82660.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Protein tyrosine phosphatase
Cluster 6grp_total > 64      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 3.2
(-3)
A 		5.8
(-2.8)
A 		17.9
(-1.6)
A 		65.9
(3)
P 		63
B 5.3
(-2.8)
A 		5.9
(-2.6)
A 		4.9
(-3)
A 		18.9
(3)
A 		14
C 46.8
(1.9)
A 		17.9
(-1.4)
A 		4.4
(-3)
A 		55.8
(3)
A 		51
avr 18.4
(-1.5) 		9.9
(-2.9) 		9.1
(-3) 		46.9
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 7.6
(-2.3)
A 		5.9
(-2.8)
A 		7.8
(-2.2)
A 		12.4
(-0.7)
A 		5.3
(-3)
A 		23.7
(3)
A 		18
B 4.9
(-1.8)
A 		6.3
(-0.9)
A 		5.2
(-1.6)
A 		4.2
(-2.3)
A 		3.1
(-3)
A 		12.1
(3)
A 		9
C 5.1
(-3)
A 		8.9
(-2.3)
A 		37.4
(3)
A 		25.6
(0.8)
A 		19.8
(-0.3)
A 		9.3
(-2.2)
A 		32
avr 5.9
(-3) 		7
(-2.4) 		16.8
(3) 		14.1
(1.5) 		9.4
(-1.1) 		15
(2) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.2
(-3)
A 		1.3
(-2.9)
A 		4.7
(-0.5)
A 		9.6
(3)
P 		8
B 1.7
(-1.8)
A 		1.5
(-2.2)
A 		1.1
(-3)
A 		4
(3)
A 		3
C 15.5
(3)
A 		5.1
(-1.5)
A 		1.5
(-3)
A 		9.4
(0.4)
A 		14
avr 6.1
(1.2) 		2.6
(-2.8) 		2.4
(-3) 		7.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.4
(-3)
A 		2.1
(-2)
A 		1.7
(-2.6)
A 		3.1
(-0.7)
A 		1.6
(-2.7)
A 		5.8
(3)
A 		4
B 1.7
(-1.9)
A 		2.1
(-1.2)
A 		1.3
(-2.6)
A 		1.1
(-3)
A 		1.3
(-2.6)
A 		4.5
(3)
A 		3
C 1.9
(-3)
A 		2.7
(-2.4)
A 		9.5
(3)
A 		5.1
(-0.5)
A 		6.4
(0.6)
A 		3.1
(-2.1)
A 		8
avr 1.7
(-3) 		2.3
(-1.7) 		4.2
(2.4) 		3.1
(0) 		3.1
(0) 		4.5
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191687_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6233
Sequence Type Exemplar sequence
Representative Public ID K03H1.8 NCBI
Target Description K03H1.8 /REP_DB=WormBase Gene ID /WP=CE00572 /TR=Q21197 /GB=CAA82660.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Protein tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066808(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066808 NCBI Caenorhabditis elegans K03H1.8 (K03H1.8) mRNA, complete cds. 11/11 None
SNAP00000019347 ENSEMBL cdna:SNAP chromosome:CEL140:III:9944597:9946555:1 11/11 None
GENEFINDER00000019361 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9945065:9946555:1 10/11 None
K03H1.8 ENSEMBL cdna:known chromosome:CEL140:III:9945547:9946384:1 gene:K03H1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9945542-9946380(+) 100.0 100.0
Public Domain and Genome References
Gene Title Protein tyrosine phosphatase
Ensembl K03H1.8
Entrez Gene 186959 Entrez gene
SwissProt Q21197 EMBL-EBI
WormBase CE00572 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82660 Hypothetical protein K03H1.8 [Caenorhabditis elegans] ref|NP_499209.1| K03H1.8 [Caenorhabditis elegans] 1.0E-127
blast CAA82660 Hypothetical protein K03H1.8 [Caenorhabditis elegans] ref|NP_499209.1| K03H1.8 [Caenorhabditis elegans] 1.0E-124
blast CAA80125 Hypothetical protein C15H7.3 [Caenorhabditis elegans] ref|NP_499135.1| C15H7.3 [Caenorhabditis elegans] sp|P34337|YK13_CAEEL Hypothetical protein C15H7.3 in chromosome III 1.0E-118
blast CAE71191 Hypothetical protein CBG18048 [Caenorhabditis briggsae] 1.0E-113
blast CAA82660 Hypothetical protein K03H1.8 [Caenorhabditis elegans] ref|NP_499209.1| K03H1.8 [Caenorhabditis elegans] 1.0E-110
blast CAA80125 Hypothetical protein C15H7.3 [Caenorhabditis elegans] ref|NP_499135.1| C15H7.3 [Caenorhabditis elegans] sp|P34337|YK13_CAEEL Hypothetical protein C15H7.3 in chromosome III 1.0E-103
blast CAE71191 Hypothetical protein CBG18048 [Caenorhabditis briggsae] 5.0E-98
blast CAA80125 Hypothetical protein C15H7.3 [Caenorhabditis elegans] ref|NP_499135.1| C15H7.3 [Caenorhabditis elegans] sp|P34337|YK13_CAEEL Hypothetical protein C15H7.3 in chromosome III 5.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.8E-34
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 6.4E-21
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.6E-29
Sequence
Target Sequence 
>C. ELEGANS:191687_AT
gaatattgaatcgtgtccttgtttcaagaacaacatgcagaaagttcgagctcccgactg
tccagttgaagatcacaagcttatcaaattgaccaatggaccagacaattttatttgtgc
tgcaaaaatcgtcgttccggatttcaataggactgttatattgactcaagtgccggatct
atcaaatactcaaaatgttgaggatttttggaggatggtatttcaggagaatataatatc
tgttattgttgctgtaatgccacttgaagtcactcttcaacaaatattcccacttctggt
aggaacttattcaaatcatggcaaaatgttcataaataagaaggtagaatcagccgttgg
agttactgaatatagcttggaaattctgccggatggatgctcaaattcattgttcactac
agtatatcatttgcaaaattggaagcagaagaaaggattggataatgttggaggtttagt
ggcaactattgagaaagtgatgaaggttaatgagaatatgctgcttatgagcatgaatgg
taccggtcgagccggaacaatgctgacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATATTGAATCGTGTCCTTGTTTC 702 325 84 Antisense
CATGCAGAAAGTTCGAGCTCCCGAC 211 211 117 Antisense
AGCTCCCGACTGTCCAGTTGAAGAT 84 81 132 Antisense
GTGCTGCAAAAATCGTCGTTCCGGA 441 471 200 Antisense
GACTCAAGTGCCGGATCTATCAAAT 556 373 246 Antisense
GTAATGCCACTTGAAGTCACTCTTC 146 463 337 Antisense
GTCACTCTTCAACAAATATTCCCAC 617 465 352 Antisense
GAAGGTAGAATCAGCCGTTGGAGTT 230 331 423 Antisense
GGAAATTCTGCCGGATGGATGCTCA 334 527 462 Antisense
GGATGCTCAAATTCATTGTTCACTA 542 513 478 Antisense
GGTCGAGCCGGAACAATGCTGACGC 238 503 628 Antisense
Sequence Source Affymetrix Proprietary Database