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[191685_at] 7TM chemoreceptor, str family

Description K02H11.3 /REP_DB=WormBase Gene ID /WP=CE18001 /GEN=str-236 /TR=O61983 /GB=AAC17788.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 91      4grp_total > 10      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 17.7
(-2.2)
A 		11.4
(-3)
A 		13.2
(-2.8)
A 		60.2
(3)
P 		49
B 12.3
(-1.1)
A 		1.9
(-3)
A 		27.3
(1.7)
A 		34.1
(3)
P 		32
C 19.4
(-1.3)
A 		49.1
(1.5)
A 		1.9
(-3)
A 		64.4
(3)
P 		63
avr 16.5
(-2.6) 		20.8
(-2) 		14.1
(-3) 		52.9
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 1.8
(-3)
A 		2.9
(-2.7)
A 		7.1
(-1.6)
A 		24.8
(2.9)
A 		25.1
(3)
A 		8.6
(-1.2)
A 		23
B 24.5
(2.8)
A 		3.2
(-3)
A 		21.6
(2)
A 		25.3
(3)
A 		16.1
(0.5)
A 		19.1
(1.3)
A 		22
C 6.9
(-2.2)
A 		41.3
(3)
A 		1.8
(-3)
A 		8.1
(-2)
A 		3.5
(-2.7)
A 		6
(-2.4)
A 		40
avr 11.1
(-2.4) 		15.8
(0.7) 		10.2
(-3) 		19.4
(3) 		14.9
(0.1) 		11.2
(-2.3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.4
(0.7)
A 		2.5
(-3)
A 		3.4
(-2.1)
A 		8.8
(3)
P 		6
B 3.9
(0)
A 		0.5
(-3)
A 		6.3
(2.1)
A 		7.3
(3)
P 		7
C 6.4
(-0.4)
A 		14.1
(3)
A 		0.6
(-3)
A 		10.9
(1.6)
P 		14
avr 5.6
(-0.6) 		5.7
(-0.5) 		3.4
(-3) 		9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.3
(-3)
A 		1
(-2.4)
A 		1.5
(-2)
A 		6.3
(1.9)
A 		7.6
(3)
A 		2.1
(-1.5)
A 		7
B 8.5
(3)
A 		1
(-3)
A 		5.2
(0.4)
A 		6.7
(1.6)
A 		6.5
(1.4)
A 		7.1
(1.9)
A 		8
C 2.5
(-2)
A 		12.6
(3)
A 		0.5
(-3)
A 		1.6
(-2.5)
A 		1.1
(-2.7)
A 		2
(-2.3)
A 		12
avr 3.8
(0.1) 		4.9
(2.6) 		2.4
(-3) 		4.9
(2.6) 		5.1
(3) 		3.7
(-0.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191685_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15196
Sequence Type Exemplar sequence
Representative Public ID K02H11.3 NCBI
Target Description K02H11.3 /REP_DB=WormBase Gene ID /WP=CE18001 /GEN=str-236 /TR=O61983 /GB=AAC17788.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071037(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071037 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-236) (str-236) mRNA, complete cds. 11/11 None
GENEFINDER00000029163 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1526326:1533031:-1 11/11 None
K02H11.3 ENSEMBL cdna:known chromosome:CEL140:V:1526326:1527914:-1 gene:K02H11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029157 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1526325-1527914(-) 93.41 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-236
Ensembl K02H11.3
Entrez Gene 192040 Entrez gene
SwissProt O61983 EMBL-EBI
WormBase CE18001 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17788 Seven tm receptor protein 236 [Caenorhabditis elegans] ref|NP_503438.1| Seven TM Receptor family member (str-236) [Caenorhabditis elegans] 0.0
blast AAC17784 Hypothetical protein K02H11.4 [Caenorhabditis elegans] ref|NP_503439.1| K02H11.4 [Caenorhabditis elegans] 0.0
blast CAE62482 Hypothetical protein CBG06584 [Caenorhabditis briggsae] 0.0
blast AAC17788 Seven tm receptor protein 236 [Caenorhabditis elegans] ref|NP_503438.1| Seven TM Receptor family member (str-236) [Caenorhabditis elegans] 1.0E-158
blast AAC17786 Seven tm receptor protein 243 [Caenorhabditis elegans] ref|NP_503437.1| Seven TM Receptor family member (str-243) [Caenorhabditis elegans] 6.0E-74
blast NP_503833 Seven TM Receptor family member (str-244) [Caenorhabditis elegans] gb|AAG24006.1| Seven tm receptor protein 244 [Caenorhabditis elegans] 4.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503438.1 7 10-32,44-63,91-113,133-155,207-229,250-269,284-306
K02H11.3 7 10-32,44-63,91-113,133-155,207-229,250-269,284-306
GENEFINDER00000029163 12 7-24,29-51,72-94,139-161,192-214,704-726,746-768,788-802,809-831,841-860,881-903,913-935
Sequence
Target Sequence 
>C. ELEGANS:191685_AT
tggactcaaacttcaaattctgcgtctggttcctcactccaattttgtacggatcgatat
ggccagttataatttttacaactctggtccctagtctctctaccgacatgctcctattga
aacattacttacatgatcgtaatctaacattgaatcaaatcacttacatcggaccgaact
attatatatttgattccaagggaatagaagttctcaacgtgacagtttgtgcggggatgt
ttgtgattgttatgatggtgttaatctcaattatcacaattgtaatatttgcctacaaat
gctacttaggagttggaaagcttttacgggagtctaatcattctgaaggttacaagaaac
ttcaatcgcaattgttgaacatgctactggctcaagtgtgcataccggcagtgctaatgc
acattcccgcctcacttcaacttatcactccatttctgcactatgggaatgaagttggaa
gtgcgttgttttgtattggtgttgccgtatatccagtacttgatcctttaccaactctgc
ttatgatacaacactatcggcaagcattgggctcgatcattgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACTCAAACTTCAAATTCTGCGT 159 547 389 Antisense
GTTCCTCACTCCAATTTTGTACGGA 583 439 417 Antisense
TAATTTTTACAACTCTGGTCCCTAG 283 635 458 Antisense
TCTACCGACATGCTCCTATTGAAAC 263 615 487 Antisense
CAAATCACTTACATCGGACCGAACT 6 193 544 Antisense
GCTACTGGCTCAAGTGTGCATACCG 290 303 771 Antisense
GGCAGTGCTAATGCACATTCCCGCC 40 537 795 Antisense
TTCAACTTATCACTCCATTTCTGCA 544 685 824 Antisense
GTGTTGCCGTATATCCAGTACTTGA 363 485 887 Antisense
CAGTACTTGATCCTTTACCAACTCT 101 205 902 Antisense
CAAGCATTGGGCTCGATCATTGCGA 641 185 949 Antisense
Sequence Source Affymetrix Proprietary Database