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[191684_at] 7TM chemoreceptor, srh family

Description F47C12.5 /REP_DB=WormBase Gene ID /WP=CE10678 /GEN=srh-220 /TR=Q20529 /GB=AAC24387.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 28      4grp_total > 23      6grp_cgc > 04      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 35.9
(3)
A 		21.3
(-3)
A 		28.1
(-0.2)
A 		32.6
(1.6)
A 		15
B 53.8
(3)
A 		29.7
(-0.2)
A 		34.8
(0.5)
A 		8.3
(-3)
A 		46
C 56.5
(-0.4)
A 		31.5
(-2.4)
A 		24.3
(-3)
A 		100
(3)
A 		76
avr 48.7
(3) 		27.5
(-3) 		29.1
(-2.5) 		47
(2.5) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 78
(3)
A 		20.8
(-2.1)
A 		10.8
(-3)
A 		10.5
(-3)
A 		59.5
(1.4)
A 		44.1
(-0)
A 		68
B 47.7
(0.6)
A 		75.1
(3)
A 		6.6
(-3)
A 		40.7
(-0)
A 		32.6
(-0.7)
A 		7.9
(-2.9)
A 		69
C 20.2
(-1.7)
A 		47.9
(3)
A 		28
(-0.4)
A 		19.6
(-1.8)
A 		12.8
(-3)
A 		41.5
(1.9)
A 		35
avr 48.6
(3) 		47.9
(2.9) 		15.1
(-3) 		23.6
(-1.5) 		35
(0.6) 		31.2
(-0.1) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 13.1
(3)
A 		4.6
(-3)
A 		7.3
(-1.1)
A 		4.8
(-2.9)
A 		9
B 17.2
(3)
A 		7.3
(-0.9)
A 		8.1
(-0.5)
A 		1.8
(-3)
A 		15
C 18.7
(3)
A 		9.1
(-2.6)
A 		8.5
(-3)
A 		16.9
(1.9)
A 		10
avr 16.3
(3) 		7
(-3) 		8
(-2.4) 		7.8
(-2.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 14.4
(1.6)
A 		7.4
(-1.1)
A 		2.3
(-3)
A 		2.7
(-2.8)
A 		18
(3)
A 		10.7
(0.2)
A 		16
B 16.6
(0.8)
A 		25
(3)
A 		1.6
(-3)
A 		10.8
(-0.6)
A 		13.2
(-0)
A 		3
(-2.6)
A 		23
C 7.5
(-1)
A 		14.6
(3)
A 		7.1
(-1.2)
A 		3.9
(-3)
A 		4.1
(-2.9)
A 		13.9
(2.6)
A 		11
avr 12.8
(1.6) 		15.7
(3) 		3.7
(-3) 		5.8
(-2) 		11.8
(1.1) 		9.2
(-0.3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191684_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10508
Sequence Type Exemplar sequence
Representative Public ID F47C12.5 NCBI
Target Description F47C12.5 /REP_DB=WormBase Gene ID /WP=CE10678 /GEN=srh-220 /TR=Q20529 /GB=AAC24387.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068050(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068050 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-220) (srh-220) mRNA, complete cds. 11/11 None
SNAP00000026879 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3976423:3978039:-1 11/11 None
F47C12.5 ENSEMBL cdna:known chromosome:CEL140:IV:3976423:3978009:-1 gene:F47C12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3976428-3978015(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-220
Ensembl F47C12.5
Entrez Gene 185917 Entrez gene
SwissProt Q20529 EMBL-EBI
WormBase CE10678 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24387 Serpentine receptor, class h protein 220 [Caenorhabditis elegans] ref|NP_500451.1| Serpentine Receptor, class H family member (srh-220) [Caenorhabditis elegans] 0.0
blast AAC24395 Serpentine receptor, class h protein 222 [Caenorhabditis elegans] ref|NP_500452.1| Serpentine Receptor, class H family member (srh-222) [Caenorhabditis elegans] 1.0E-115
blast AAC24394 Serpentine receptor, class h protein 223 [Caenorhabditis elegans] ref|NP_500453.1| Serpentine Receptor, class H family member (srh-223) [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500451.1 7 24-46,67-89,104-123,144-163,209-226,247-269,279-298
F47C12.5 7 24-46,67-89,104-123,144-163,209-226,247-269,279-298
SNAP00000026879 7 34-56,77-99,114-133,154-173,219-236,257-279,289-308
Sequence
Target Sequence 
>C. ELEGANS:191684_AT
tggacacgatttcgcattccgtttttaacattttattacataaccgcttttctatttttc
tacccgatatatataacaatgccgcctggacctgaacatcgaaaagactttattttgaag
tccatcccttgcctacacccagatgtacgtgcagctcctctatacctggttgaattgggt
ggactgaaattcgcaatatgcacgaccagtgaaagtttattaatagtgtttacacttggc
accatgttccttcttatcctgaactctctcagaaactatggtcatactcgatccaagaaa
accgtcgaccttcagaaaaagcttatcagagcaatatttattcagttggctctcccattc
tgtatcatatgggttccaataatctactatacgtttatcggatttttcaatgcagctatt
aacaactttatgtatgttttaatggcaactcatgggctagtttcgacacttgttatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACACGATTTCGCATTCCGTTTT 511 547 421 Antisense
TATAACAATGCCGCCTGGACCTGAA 241 659 492 Antisense
TTTATTTTGAAGTCCATCCCTTGCC 510 671 529 Antisense
TTGCCTACACCCAGATGTACGTGCA 463 701 549 Antisense
CAGCTCCTCTATACCTGGTTGAATT 596 203 572 Antisense
GTGTTTACACTTGGCACCATGTTCC 674 485 646 Antisense
CCATGTTCCTTCTTATCCTGAACTC 57 271 662 Antisense
GATCCAAGAAAACCGTCGACCTTCA 658 413 710 Antisense
ATATTTATTCAGTTGGCTCTCCCAT 337 19 754 Antisense
GGCTCTCCCATTCTGTATCATATGG 130 539 768 Antisense
GGGCTAGTTTCGACACTTGTTATGC 673 491 874 Antisense
Sequence Source Affymetrix Proprietary Database