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[191683_at]

Description C14F11.1 /REP_DB=WormBase Gene ID /WP=CE02477 /TR=Q17994 /GB=AAA80361.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Aspartate aminotransferase
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 28      6grp_total > 62      4grp_total > 61      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5798
1 2 3 4 range
A 9072.1
(3)
P 		7675.2
(1.2)
P 		8041.9
(1.6)
P 		4506.6
(-3)
P 		4566
B 9345
(3)
P 		8168.7
(1.8)
P 		8193.8
(1.8)
P 		3676
(-3)
P 		5669
C 8504.6
(3)
P 		7661.7
(2)
P 		7233.9
(1.5)
P 		3547
(-3)
P 		4958
avr 8973.9
(3) 		7835.2
(1.7) 		7823.2
(1.6) 		3909.9
(-3) 		5064

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7898
1 2 3 4 5 6 range
A 8375.4
(-3)
P 		9833
(-1.6)
P 		14559.6
(3)
P 		14249.9
(2.7)
P 		10330.6
(-1.1)
P 		9358.1
(-2)
P 		6184
B 9385.7
(-0.7)
P 		9182.8
(-0.9)
P 		13003.4
(3)
P 		13002.1
(3)
P 		9393.9
(-0.7)
P 		7113.2
(-3)
P 		5890
C 8772.5
(-2.5)
P 		9172.6
(-2.1)
P 		15011.4
(3)
P 		12687.9
(1)
P 		11059.6
(-0.5)
P 		8176
(-3)
P 		6835
avr 8844.5
(-2.4) 		9396.1
(-1.8) 		14191.5
(3) 		13313.3
(2.1) 		10261.4
(-0.9) 		8215.8
(-3) 		5976
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2705
1 2 3 4 range
A 3303.1
(3)
P 		1666.1
(-0.7)
P 		2102.3
(0.3)
P 		659.7
(-3)
P 		2643
B 2980
(3)
P 		2017.5
(0.4)
P 		1898.7
(0)
P 		783.4
(-3)
P 		2197
C 2815.3
(3)
P 		2202.8
(1.3)
P 		2521.3
(2.2)
P 		598.1
(-3)
P 		2217
avr 3032.8
(3) 		1962.1
(0.3) 		2174.1
(0.8) 		680.4
(-3) 		2352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2277
1 2 3 4 5 6 range
A 1543.9
(-3)
P 		3497.1
(2.7)
P 		3170.8
(1.7)
P 		3614.1
(3)
P 		3117.3
(1.6)
P 		2278.4
(-0.9)
P 		2070
B 3265.8
(0.2)
P 		3056.6
(-0.9)
P 		3157.6
(-0.4)
P 		3443.8
(1.1)
P 		3816.6
(3)
P 		2652.5
(-3)
P 		1164
C 3251.6
(0.3)
P 		2798.8
(-1.8)
P 		3820.7
(3)
P 		2551.6
(-3)
P 		3578.7
(1.9)
P 		2737
(-2.1)
P 		1269
avr 2687.1
(-2.2) 		3117.5
(0.6) 		3383
(2.2) 		3203.2
(1.1) 		3504.2
(3) 		2556
(-3) 		948
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191683_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17216
Sequence Type Exemplar sequence
Representative Public ID C14F11.1 NCBI
Target Description C14F11.1 /REP_DB=WormBase Gene ID /WP=CE02477 /TR=Q17994 /GB=AAA80361.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Aspartate aminotransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171702(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171702 NCBI Caenorhabditis elegans C14F11.1a (C14F11.1) mRNA, complete cds. 11/11 None
SNAP00000008177 ENSEMBL cdna:SNAP chromosome:CEL140:X:6240961:6242473:1 11/11 None
GENEFINDER00000008180 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6240961:6242473:1 11/11 None
C14F11.1a ENSEMBL cdna:known chromosome:CEL140:X:6240961:6242654:1 gene:C14F11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171703 6/11 Cross Hyb Matching Probes None
C14F11.1b.2 6/11 Cross Hyb Matching Probes None
C14F11.1b.1 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180897 2 1 NM_171702 191683_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6240960-6242473(+) 100.0 100.0
Public Domain and Genome References
Ensembl C14F11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80361 Hypothetical protein C14F11.1a [Caenorhabditis elegans] ref|NP_741810.1| C14F11.1a [Caenorhabditis elegans] 0.0
blast CAE61217 Hypothetical protein CBG05011 [Caenorhabditis briggsae] 0.0
blast NP_002071 aspartate aminotransferase 2 precursor [Homo sapiens] 1.0E-167
Protein Families
Method ID Description E-Value
ec AATM_HUMAN (P00505) Aspartate aminotransferase, mitochondrial precursor (EC 2.6.1.1) (Transaminase A) (Glutamate oxaloacetate transaminase-2) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004839 EMBL-EBI Aminotransferase, class I and II 6.2E-98
Sequence
Target Sequence 
>C. ELEGANS:191683_AT
aacgcaacttgtttgtcttcttcgatatggcttaccaaggtttcgcttccggagatgttg
acaatgacgcgttcgctgttcgttactttgtcgagcaaggacacaacattgttctctctc
aatcctttgccaagaacatgggactttatggtgaacgagtcggtgctttctccgttgtta
cctcggacgctgatgaggctgctcgtgttgcttctcaagtcaagatccttattcgcccac
tctactccaacccaccagtccatggagctcgcattgcttcccgcatcctcgcggatccag
ctctcaacaagcaatggctcggagatgtcaagctcatggctgatcgtatcatcaccatga
gaactacgctcaaggatttgctcgccaaggagggatctactcgtaattgggagcacatta
ccaaccaaattggaatgttctgctttactggaatcaacccacaacaagttgagaagctta
tcaaggaacactctgtctacctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGCAACTTGTTTGTCTTCTTCGA 158 145 668 Antisense
TATGGCTTACCAAGGTTTCGCTTCC 407 653 693 Antisense
GTTTCGCTTCCGGAGATGTTGACAA 410 449 707 Antisense
AATGACGCGTTCGCTGTTCGTTACT 149 165 730 Antisense
GGACACAACATTGTTCTCTCTCAAT 188 527 766 Antisense
CTCTCTCAATCCTTTGCCAAGAACA 457 231 781 Antisense
GGTGAACGAGTCGGTGCTTTCTCCG 247 501 817 Antisense
TCAAGTCAAGATCCTTATTCGCCCA 588 631 882 Antisense
GATCCAGCTCTCAACAAGCAATGGC 41 417 961 Antisense
GAACTACGCTCAAGGATTTGCTCGC 652 349 1028 Antisense
TCAAGGAACACTCTGTCTACCTCAC 440 633 1148 Antisense
Sequence Source Affymetrix Proprietary Database