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[191680_at] 7TM chemoreceptor, srh family

Description Y40D12A.3 /REP_DB=WormBase Gene ID /WP=CE26695 /GEN=srh-40 /TR=O76724 /GB=AAC26947.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 05      4grp_total > 35      6grp_cgc > 21      6grp_cgc_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 8.9
(-3)
A 		82.6
(3)
A 		30.9
(-1.2)
A 		75.8
(2.4)
A 		74
B 10.3
(-2.9)
A 		50.2
(3)
A 		9.9
(-3)
A 		26.9
(-0.5)
A 		40
C 40.1
(-0.4)
A 		80.9
(2.9)
A 		7.6
(-3)
A 		82.6
(3)
A 		75
avr 19.8
(-2.6) 		71.2
(3) 		16.1
(-3) 		61.8
(2) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 64.6
(3)
A 		46.1
(1.1)
A 		44
(0.8)
A 		7.6
(-3)
A 		10.8
(-2.7)
A 		8.9
(-2.9)
A 		57
B 41
(2.4)
M 		10.2
(-2.8)
A 		44.7
(3)
A 		9.9
(-2.8)
A 		36.9
(1.7)
A 		8.7
(-3)
A 		36
C 50.4
(2.2)
A 		57.5
(3)
A 		9.4
(-2.7)
A 		36.1
(0.4)
A 		35.3
(0.4)
A 		7.2
(-3)
A 		50
avr 52
(3) 		37.9
(1.1) 		32.7
(0.4) 		17.9
(-1.7) 		27.7
(-0.3) 		8.3
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 3.2
(-3)
A 		17.9
(3)
A 		8.1
(-1)
A 		11.1
(0.2)
A 		15
B 3.3
(-2.4)
A 		12.4
(3)
A 		2.3
(-3)
A 		5.7
(-1)
A 		10
C 13.3
(0.1)
A 		23.3
(3)
A 		2.6
(-3)
A 		13.9
(0.3)
A 		21
avr 6.6
(-2) 		17.9
(3) 		4.3
(-3) 		10.2
(-0.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 11.9
(1.1)
A 		16.4
(3)
A 		9.6
(0.2)
A 		1.9
(-3)
A 		3.3
(-2.4)
A 		2.2
(-2.9)
A 		15
B 14.3
(2.7)
M 		3.4
(-2.6)
A 		10.9
(1)
A 		2.6
(-3)
A 		15
(3)
A 		3.3
(-2.7)
A 		12
C 18.7
(3)
A 		17.6
(2.6)
A 		2.4
(-3)
A 		7.3
(-1.2)
A 		11.4
(0.3)
A 		2.4
(-3)
A 		16
avr 15
(3) 		12.5
(1.8) 		7.6
(-0.6) 		3.9
(-2.4) 		9.9
(0.5) 		2.6
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191680_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7821
Sequence Type Exemplar sequence
Representative Public ID Y40D12A.3 NCBI
Target Description Y40D12A.3 /REP_DB=WormBase Gene ID /WP=CE26695 /GEN=srh-40 /TR=O76724 /GB=AAC26947.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066058(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066058 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-40) (srh-40) mRNA, complete cds. 10/11 None
Y40D12A.3 ENSEMBL cdna:known chromosome:CEL140:III:6610757:6612198:1 gene:Y40D12A.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000007328 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6610755-6612197(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-40
Ensembl Y40D12A.3
Entrez Gene 191859 Entrez gene
SwissProt O76724 EMBL-EBI
WormBase CE26695 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC26947 Serpentine receptor, class h protein 40 [Caenorhabditis elegans] ref|NP_498459.1| Serpentine Receptor, class H family member (srh-40) [Caenorhabditis elegans] 0.0
blast CAE73372 Hypothetical protein CBG20810 [Caenorhabditis briggsae] 1.0E-91
blast CAA22460 Hypothetical protein Y54G11A.12 [Caenorhabditis elegans] ref|NP_496974.2| Serpentine Receptor, class H family member (srh-41) [Caenorhabditis elegans] 1.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498459.1 7 23-45,71-93,103-125,150-172,210-232,253-275,290-312
Y40D12A.3 7 23-45,71-93,103-125,150-172,210-232,253-275,290-312
Sequence
Target Sequence 
>C. ELEGANS:191680_AT
aagtattaacacttccttctgatcaagatgctgcaaagttacaagtactacaaaaatatc
catgtctgccgtcatactttctggatgaccgagcatttttaattcagattgatggaagga
caatgtttaatccacatatgtacattacttgtttcatcgtagcatgttttattatttttt
acatgagtaatagtttctggcatttacttcctaaaaacaatccaacaatgtctacatcaa
cacggaaattgattacaagtttctacatttctatgtgcatacagtttttgattcctttga
atgttggatatattcctaatatttattggaatttttctgtgacaatcgattactattcgc
aagaaatcaacaatataagtgttgttttattgacttctcattgtacattatcatcaattg
taactatattcatatacaccccatacagaaagttcactttggatttgatttttaacagta
ggttacctatttcacttcgtggtgaaactcaattttcagaaattttacaaattaattggg
tcaaatcaagtgtctccacagttgttgttagcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTATTAACACTTCCTTCTGATCA 690 155 509 Antisense
AAAATATCCATGTCTGCCGTCATAC 161 133 561 Antisense
GTCTGCCGTCATACTTTCTGGATGA 496 471 572 Antisense
GTACATTACTTGTTTCATCGTAGCA 54 461 648 Antisense
TAGTTTCTGGCATTTACTTCCTAAA 185 653 699 Antisense
GTGCATACAGTTTTTGATTCCTTTG 626 479 783 Antisense
GACTTCTCATTGTACATTATCATCA 37 373 900 Antisense
CTATATTCATATACACCCCATACAG 211 225 932 Antisense
GTAGGTTACCTATTTCACTTCGTGG 607 455 986 Antisense
GGGTCAAATCAAGTGTCTCCACAGT 583 497 1046 Antisense
GTGTCTCCACAGTTGTTGTTAGCGT 242 487 1058 Antisense
Sequence Source Affymetrix Proprietary Database