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[191678_s_at] Yeast D96591.6 protein like

Description F30A10.9 /REP_DB=WormBase Gene ID /WP=CE09810 /TR=Q93638 /GB=CAB03017.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast D96591.6 protein like
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 93      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 46      6grp_total > 75      4grp_total > 02      6grp_highest_sub > In      6grp_cgc > 77      6grp_high1_sub > 04      6grp_cgc_sub > 04_05_06      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18885
1 2 3 4 range
A 3474.7
(-2.7)
P 		2674
(-2.9)
P 		2457.4
(-3)
P 		20764.3
(3)
P 		18307
B 3345.3
(-2.5)
P 		2341.8
(-2.8)
P 		1879.2
(-3)
P 		19684.2
(3)
P 		17805
C 3168.1
(-2.7)
P 		2566.7
(-2.9)
P 		2320.2
(-3)
P 		19275.4
(3)
P 		16955
avr 3329.4
(-2.6) 		2527.5
(-2.9) 		2218.9
(-3) 		19908
(3) 		17689

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1565
1 2 3 4 5 6 range
A 3129.3
(0.7)
P 		2689.1
(-3)
P 		2957.4
(-0.7)
P 		3396.5
(3)
P 		2892.2
(-1.3)
P 		2867.6
(-1.5)
P 		707
B 2914.4
(-1.9)
P 		3098.5
(-0.5)
P 		2783
(-3)
P 		2948
(-1.7)
P 		3281.7
(1)
P 		3526.1
(3)
P 		743
C 2813.1
(-1.9)
P 		2693.2
(-2.4)
P 		2526.8
(-3)
P 		4091.5
(3)
P 		2728.5
(-2.2)
P 		3828.2
(2)
P 		1565
avr 2952.3
(-1.4) 		2826.9
(-2.4) 		2755.7
(-3) 		3478.7
(3) 		2967.5
(-1.2) 		3407.3
(2.4) 		723
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3759
1 2 3 4 range
A 1265.2
(-1.3)
P 		580.5
(-3)
P 		642.4
(-2.8)
P 		3039.5
(3)
P 		2459
B 1066.8
(-2)
P 		578.4
(-2.8)
P 		435.5
(-3)
P 		4194.7
(3)
P 		3759
C 1048.7
(-2.3)
P 		737.9
(-3)
P 		808.7
(-2.8)
P 		3250.1
(3)
P 		2512
avr 1126.9
(-2) 		632.3
(-3) 		628.9
(-3) 		3494.8
(3) 		2866

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 756
1 2 3 4 5 6 range
A 576.9
(-3)
P 		956.4
(3)
P 		644.1
(-1.9)
P 		861.4
(1.5)
P 		872.7
(1.7)
P 		698.2
(-1.1)
P 		380
B 1014.1
(0.1)
P 		1031.4
(0.2)
P 		675.8
(-3)
P 		780.8
(-2)
P 		1333.3
(3)
P 		1314.9
(2.8)
P 		658
C 1042.7
(0.8)
P 		821.8
(-1.3)
P 		643.1
(-3)
P 		822.8
(-1.3)
P 		882.9
(-0.7)
P 		1281.5
(3)
P 		638
avr 877.9
(0) 		936.5
(0.8) 		654.3
(-3) 		821.7
(-0.7) 		1029.6
(2.1) 		1098.2
(3) 		444
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191678_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2153
Sequence Type Exemplar sequence
Representative Public ID F30A10.9 NCBI
Target Description F30A10.9 /REP_DB=WormBase Gene ID /WP=CE09810 /TR=Q93638 /GB=CAB03017.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Yeast D96591.6 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060122(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060122 NCBI Caenorhabditis elegans F30A10.9 (F30A10.9) mRNA, complete cds. 11/11 None
SNAP00000021996 ENSEMBL cdna:SNAP chromosome:CEL140:I:9512956:9513888:-1 11/11 None
GENEFINDER00000021999 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9512956:9513888:-1 11/11 None
F30A10.9 ENSEMBL cdna:known chromosome:CEL140:I:9512689:9513891:-1 gene:F30A10.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9512886-9513819(-) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast D96591.6 protein like
Ensembl F30A10.9
Entrez Gene 172780 Entrez gene
SwissProt Q93638 EMBL-EBI
WormBase CE09810 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:18411_AT expressed protein at
ATH1-121501:266556_AT expressed protein at
CANINE:1600690_AT similar to Protein C14orf111 cfa
CANINE_2:CFA.20827.1.S1_AT similar to Protein C14orf111 cfa
CANINE_2:CFAAFFX.6153.1.S1_S_AT similar to Protein C14orf111 cfa
DROSOPHILA_2:1627349_AT Bekka dm
DROSGENOME1:146110_AT Bekka dm
CHICKEN:GGA.8803.1.S1_AT similar to Protein C14orf111 (CGI-35) gga
CHICKEN:GGA.8803.2.S1_A_AT similar to Protein C14orf111 (CGI-35) gga
HG-U133_PLUS_2:219927_AT chromosome 14 open reading frame 111 hs
HG-U133A:219927_AT chromosome 14 open reading frame 111 hs
HG-U133A_2:219927_AT chromosome 14 open reading frame 111 hs
HU35KSUBA:HUM_ALU_AT chromosome 14 open reading frame 111 hs
HU35KSUBB:HUM_ALU_AT chromosome 14 open reading frame 111 hs
HU35KSUBC:HUM_ALU_AT chromosome 14 open reading frame 111 hs
HU35KSUBD:HUM_ALU_AT chromosome 14 open reading frame 111 hs
HUGENEFL:HUM_ALU_AT chromosome 14 open reading frame 111 hs
HC-G110:HUM_ALU_AT chromosome 14 open reading frame 111 hs
HU35KSUBC:RC_N32586_AT chromosome 14 open reading frame 111 hs
U133_X3P:G7705729_3P_S_AT chromosome 14 open reading frame 111 hs
U133_X3P:HS.287426.0.S1_3P_AT chromosome 14 open reading frame 111 hs
HG-U133A_2:212499_S_AT chromosome 14 open reading frame 111 hs
HG-U133_PLUS_2:212499_S_AT chromosome 14 open reading frame 111 hs
HG-U133A:212499_S_AT chromosome 14 open reading frame 111 hs
HG-U133A_2:215567_AT chromosome 14 open reading frame 111 hs
HG-U133_PLUS_2:215567_AT chromosome 14 open reading frame 111 hs
HG-U133A:215567_AT chromosome 14 open reading frame 111 hs
HG-U95E:77850_AT chromosome 14 open reading frame 111 hs
HG-U95E:78285_I_AT chromosome 14 open reading frame 111 hs
HG-U95E:78288_F_AT chromosome 14 open reading frame 111 hs
U133_X3P:HS.162102.0.A1_3P_AT Chromosome 14 open reading frame 111 hs
HG-U133_PLUS_2:240928_AT Chromosome 14 open reading frame 111 hs
HG-U133B:240928_AT Chromosome 14 open reading frame 111 hs
HG-U95E:84019_AT Chromosome 14 open reading frame 111 hs
RG-U34C:RC_AA817967_AT similar to CGI-35 protein (predicted) rn
RAE230A:1367494_AT similar to CGI-35 protein (predicted) rn
RAE230B:1367494_AT similar to CGI-35 protein (predicted) rn
RAT230_2:1367494_AT similar to CGI-35 protein (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB03017 Hypothetical protein F30A10.9 [Caenorhabditis elegans] ref|NP_492523.1| F30A10.9 [Caenorhabditis elegans] 1.0E-109
blast CAE56709 Hypothetical protein CBG24495 [Caenorhabditis briggsae] 3.0E-77
blast XP_397091 PREDICTED: similar to Protein C14orf111 (CGI-35) [Apis mellifera] 9.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR006984 EMBL-EBI Protein of unknown function DUF652 1.4E-64
Sequence
Target Sequence 
>C. ELEGANS:191678_S_AT
aaacgcttgaagtccaacgccagaaaaagcgctgtaaacaagcttgtcaaaaagacagac
aacagaataaaagaagaacaaagagtcattagaacaccgaaagtagatgaacaagaactc
aaattggtccgtgctccaaaaatctcatccgctatgtttatgaaatacaatacacagctg
ggtccaccatttcacgttattgtcgataccaattttgtgaatttcgccgtcaaaaatcgc
attgacatgtttcaaggattcatggattgtctgttcgcgaaaactattgtgtacgcaact
gactgtgtattggctgaattggaaaaagtgagaagattcaaaattgctctgaaagttctg
aaagatccacgtgtgcagagactgaagtgtgagcacaaaggaacatatgctgatgattgt
ttggttcaaagagttacacagcataaatgctatattgtggccacttgtgatcgtgatctg
aagcgccgcatccgaaagatcccaggagttccgatcatgtacattgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGCTTGAAGTCCAACGCCAGAA 113 127 19 Antisense
AAAAATCTCATCCGCTATGTTTATG 551 129 156 Antisense
ACAATACACAGCTGGGTCCACCATT 324 115 185 Antisense
GTCCACCATTTCACGTTATTGTCGA 625 475 200 Antisense
GAATTTCGCCGTCAAAAATCGCATT 288 325 237 Antisense
GGATTCATGGATTGTCTGTTCGCGA 450 509 274 Antisense
GTACGCAACTGACTGTGTATTGGCT 58 459 309 Antisense
GTGGCCACTTGTGATCGTGATCTGA 698 491 475 Antisense
TGATCTGAAGCGCCGCATCCGAAAG 380 565 492 Antisense
GCATCCGAAAGATCCCAGGAGTTCC 635 297 506 Antisense
AGGAGTTCCGATCATGTACATTGTC 585 55 522 Antisense
Sequence Source Affymetrix Proprietary Database