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[191676_at] Transthyretin-like family

Description K03H1.4 /REP_DB=WormBase Gene ID /WP=CE00475 /TR=SW:P34500 /GB=CAA82657.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_highest_8_8 > 08      4grp_high_8_8 > 52      6grp_highest_nonorm > 37      6grp_total > 53      4grp_total > 51      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5262
1 2 3 4 range
A 3260.7
(-0.1)
P 		5961.6
(3)
P 		3772.1
(0.5)
P 		744.1
(-3)
P 		5218
B 3814.9
(1.2)
P 		5158.9
(3)
P 		5153.7
(3)
P 		699.4
(-3)
P 		4460
C 3549.5
(0.6)
P 		5345.5
(3)
P 		4212.3
(1.5)
P 		926.7
(-3)
P 		4419
avr 3541.7
(0.5) 		5488.7
(3) 		4379.4
(1.6) 		790.1
(-3) 		4699

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3081
1 2 3 4 5 6 range
A 5176
(-1.4)
P 		4533.3
(-3)
P 		6994.9
(3)
P 		5037.8
(-1.8)
P 		4706.1
(-2.6)
P 		4733.2
(-2.5)
P 		2462
B 4999.5
(1)
P 		4371.4
(-1.3)
P 		5414.7
(2.5)
P 		3914
(-3)
P 		5542
(3)
P 		4753.2
(0.1)
P 		1628
C 4086.6
(-3)
P 		4691.9
(-0.7)
P 		5665.1
(3)
P 		4115
(-2.9)
P 		4935.7
(0.2)
P 		5135.3
(1)
P 		1579
avr 4754
(-1.6) 		4532.2
(-2.4) 		6024.9
(3) 		4355.6
(-3) 		5061.3
(-0.5) 		4873.9
(-1.1) 		1669
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1428
1 2 3 4 range
A 1187.2
(2.5)
P 		1294.1
(3)
P 		986.1
(1.4)
P 		108.9
(-3)
P 		1185
B 1216.5
(2.7)
P 		1274.1
(3)
P 		1194.2
(2.6)
P 		149
(-3)
P 		1125
C 1175
(1.4)
P 		1536.8
(3)
P 		1468.1
(2.7)
P 		156.2
(-3)
P 		1381
avr 1192.9
(2.1) 		1368.3
(3) 		1216.1
(2.3) 		138
(-3) 		1230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1424
1 2 3 4 5 6 range
A 954.2
(-3)
P 		1612.3
(3)
P 		1523.3
(2.2)
P 		1277.7
(-0.1)
P 		1420.1
(1.2)
P 		1152.4
(-1.2)
P 		658
B 1739.6
(0.5)
P 		1455
(-0.9)
P 		1314.8
(-1.6)
P 		1036.7
(-3)
P 		2251.6
(3)
P 		1772.5
(0.6)
P 		1215
C 1514.7
(1.6)
P 		1431.6
(1.1)
P 		1441.9
(1.1)
P 		827.5
(-3)
P 		1597.1
(2.2)
P 		1719.1
(3)
P 		892
avr 1402.8
(0) 		1499.6
(0.8) 		1426.7
(0.2) 		1047.3
(-3) 		1756.3
(3) 		1548
(1.2) 		709
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191676_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7541
Sequence Type Exemplar sequence
Representative Public ID K03H1.4 NCBI
Target Description K03H1.4 /REP_DB=WormBase Gene ID /WP=CE00475 /TR=SW:P34500 /GB=CAA82657.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066802 NCBI Caenorhabditis elegans K03H1.4 (K03H1.4) mRNA, complete cds. 11/11 None
SNAP00000019341 ENSEMBL cdna:SNAP chromosome:CEL140:III:9927661:9928847:1 11/11 None
GENEFINDER00000019355 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9927661:9928847:1 11/11 None
K03H1.4 ENSEMBL cdna:known chromosome:CEL140:III:9927659:9928899:1 gene:K03H1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9927656-9928843(+) 100.0 100.0
Public Domain and Genome References
Gene Title Transthyretin-like family
Ensembl K03H1.4
Entrez Gene 176403 Entrez gene
SwissProt P34500 EMBL-EBI
WormBase CE00475 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA82657 Hypothetical protein K03H1.4 [Caenorhabditis elegans] ref|NP_499203.1| K03H1.4 [Caenorhabditis elegans] sp|P34500|YMS4_CAEEL Hypothetical UPF0205 protein K03H1.4 in chromosome III precursor 1.0E-80
blast CAE65086 Hypothetical protein CBG09944 [Caenorhabditis briggsae] 9.0E-71
blast CAA82656 Hypothetical protein K03H1.3 [Caenorhabditis elegans] ref|NP_499202.1| K03H1.3 [Caenorhabditis elegans] sp|P34499|YMS3_CAEEL Hypothetical UPF0205 protein K03H1.3 in chromosome III precursor 2.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 1.5E-67
Sequence
Target Sequence 
>C. ELEGANS:191676_AT
taaatacgcaattctcggccttgttctggtcggcaccgttgcctctttggactttatcgg
tcgtacacaatctgctgctataaagggaagattagtatgcgagggaaagccagcttcagg
agttaaagtcaagttgatggagtccgataacagttttggacctggattccttgacagcga
tgataagatggcatcaggaaaggctgactcgcatggagaattcaatttgagtggatctac
caaggaaatcaccggaatcgagccctatttggtagtgttccatgattgcaaggacggaat
tacaccatgccaacgcgtgttccgtgtcaacgttccaaaatcgtacaccaacagcggaag
ctctgccaagaaaacctatgatgctggagtcatcgagcttgccggaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAATACGCAATTCTCGGCCTTGTT 382 641 18 Antisense
CCGTTGCCTCTTTGGACTTTATCGG 229 265 53 Antisense
TTATCGGTCGTACACAATCTGCTGC 490 677 71 Antisense
GTATGCGAGGGAAAGCCAGCTTCAG 242 455 112 Antisense
TTGGACCTGGATTCCTTGACAGCGA 462 709 173 Antisense
ATCGAGCCCTATTTGGTAGTGTTCC 560 33 274 Antisense
AATTACACCATGCCAACGCGTGTTC 74 177 315 Antisense
GTGTTCCGTGTCAACGTTCCAAAAT 139 485 334 Antisense
ATCGTACACCAACAGCGGAAGCTCT 563 35 357 Antisense
GCGGAAGCTCTGCCAAGAAAACCTA 160 293 371 Antisense
TGGAGTCATCGAGCTTGCCGGAAAG 251 547 402 Antisense
Sequence Source Affymetrix Proprietary Database