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[191674_at] LDL-receptor domain protein

Description C07G1.2 /REP_DB=WormBase Gene ID /WP=CE06778 /TR=Q17797 /GB=AAB00659.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=LDL-receptor domain protein
Cluster 4grp_high_8_8 > 29      6grp_total > 03      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 49.8
(-2.3)
P 		75.3
(0.5)
P 		43.7
(-3)
A 		97.5
(3)
P 		54
B 33.6
(-2.6)
A 		55
(3)
A 		50.8
(1.9)
M 		32.2
(-3)
A 		23
C 38.2
(-3)
P 		58.1
(3)
P 		47.5
(-0.2)
P 		45
(-0.9)
P 		20
avr 40.5
(-3) 		62.8
(3) 		47.3
(-1.2) 		58.2
(1.8) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 41.2
(-2.2)
A 		59.1
(-0.5)
P 		57.4
(-0.6)
A 		94.5
(3)
P 		33.2
(-3)
P 		40.1
(-2.3)
A 		61
B 52.3
(2.6)
P 		45
(1.4)
A 		46.3
(1.6)
P 		50.3
(2.3)
P 		55
(3)
P 		16.6
(-3)
A 		38
C 66.8
(3)
P 		62.6
(2.2)
P 		35.9
(-2.6)
P 		35.2
(-2.7)
A 		62.6
(2.2)
P 		33.8
(-3)
A 		33
avr 53.4
(1.7) 		55.6
(2.1) 		46.5
(0.3) 		60
(3) 		50.3
(1) 		30.2
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 18.1
(3)
P 		16.3
(1.4)
P 		11.4
(-3)
A 		14.3
(-0.4)
P 		7
B 10.7
(0.4)
A 		13.6
(3)
A 		11.8
(1.4)
M 		6.9
(-3)
A 		7
C 12.7
(0.4)
P 		16.7
(3)
P 		16.5
(2.9)
P 		7.6
(-3)
P 		9
avr 13.8
(1.3) 		15.5
(3) 		13.2
(0.7) 		9.6
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 7.6
(-3)
A 		21
(1.9)
P 		12.5
(-1.2)
A 		24
(3)
P 		10
(-2.1)
P 		9.8
(-2.2)
A 		16
B 18.2
(1.4)
P 		15
(0.3)
A 		11.2
(-1.1)
P 		13.3
(-0.4)
P 		22.4
(3)
P 		6.2
(-3)
A 		16
C 24.8
(3)
P 		19.1
(1.1)
P 		9.1
(-2.3)
P 		7.1
(-3)
A 		20.3
(1.5)
P 		11.3
(-1.6)
A 		18
avr 16.9
(2) 		18.4
(3) 		10.9
(-1.8) 		14.8
(0.7) 		17.6
(2.5) 		9.1
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191674_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9330
Sequence Type Exemplar sequence
Representative Public ID C07G1.2 NCBI
Target Description C07G1.2 /REP_DB=WormBase Gene ID /WP=CE06778 /TR=Q17797 /GB=AAB00659.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=LDL-receptor domain protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068975(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068975 NCBI Caenorhabditis elegans C07G1.2 (C07G1.2) mRNA, complete cds. 10/11 None
C07G1.2 ENSEMBL cdna:known chromosome:CEL140:IV:8206595:8210916:1 gene:C07G1.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020464 1/11 Cross Hyb Matching Probes None
GENEFINDER00000020472 4/11 Cross Hyb Matching Probes None
GENEFINDER00000020477 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8206756-8210922(+) 100.0 100.0
Public Domain and Genome References
Gene Title LDL-receptor domain protein
Ensembl C07G1.2
Entrez Gene 3565197 Entrez gene
SwissProt Q17797 EMBL-EBI
WormBase CE34664 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00659 Hypothetical protein C07G1.2 [Caenorhabditis elegans] ref|NP_501376.2| C07G1.2 [Caenorhabditis elegans] 0.0
blast CAE58434 Hypothetical protein CBG01569 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 7.0E-9
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 1.0E-6
Pfam IPR003014 EMBL-EBI N/apple PAN 4.8E-15
Sequence
Target Sequence 
>C. ELEGANS:191674_AT
ggacttttattccacacgtacaagggtgtgctcgaaaatgccgagaaagtcttctaatgt
gtgaggctttttcatatgaaccaaaaagtcaaacatgtcttctaaccgacacctcacaaa
cattttccagtctagcacggaaaattacttctctgtattaccgaagacgattttctacaa
aagacgttgaattccaagttgagaacaaagtattatatgcgacaaaatcggccaaaaaag
gacatgtatgtgatgataactacagtcgagaaaagctatcatcaatttgtagagtgctcg
gatttgggtgctcacattgtcagcaagcagcttgtggtgatggatcttgcattcgatttg
atcaactttgcaatggacaaatagattgccaatcaggagaagacgaagattactgtagag
caaactcatttcggttgaccaatggatctgatacaagtggatacctcgaggttctgtttc
gatcaagatgggaaccaatttgtgcggatcatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTTTTATTCCACACGTACAAGG 20 525 1124 Antisense
GTCTTCTAATGTGTGAGGCTTTTTC 416 467 1172 Antisense
AAACATGTCTTCTAACCGACACCTC 221 129 1214 Antisense
TAACCGACACCTCACAAACATTTTC 673 571 1226 Antisense
ACAAACATTTTCCAGTCTAGCACGG 505 111 1239 Antisense
AGAGTGCTCGGATTTGGGTGCTCAC 264 69 1414 Antisense
GGGTGCTCACATTGTCAGCAAGCAG 258 497 1429 Antisense
GGTGATGGATCTTGCATTCGATTTG 266 501 1459 Antisense
GAGCAAACTCATTTCGGTTGACCAA 237 391 1541 Antisense
GATACCTCGAGGTTCTGTTTCGATC 48 425 1583 Antisense
GGAACCAATTTGTGCGGATCATCTT 269 531 1614 Antisense
Sequence Source Affymetrix Proprietary Database