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[191673_at] 7TM chemoreceptor, srh family

Description F07C4.13 /REP_DB=WormBase Gene ID /WP=CE24881 /GEN=srh-200 /TR=P91219 /GB=AAG24046.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 16      4grp_total > 27      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 27.6
(-1.7)
A 		54.3
(-0.1)
A 		6.3
(-3)
A 		104.1
(3)
A 		98
B 58
(1.8)
A 		65.1
(3)
A 		28.5
(-3)
A 		50.7
(0.6)
A 		37
C 42.9
(-1.2)
A 		59.8
(0.1)
A 		17.6
(-3)
A 		99.7
(3)
P 		82
avr 42.8
(-0.7) 		59.7
(0.8) 		17.5
(-3) 		84.8
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 61.4
(1.9)
A 		21.4
(-3)
A 		70.6
(3)
A 		27.5
(-2.3)
A 		36.9
(-1.1)
A 		40.4
(-0.7)
A 		49
B 19.9
(-0.4)
A 		26.8
(1.1)
A 		20.2
(-0.3)
A 		7.3
(-3)
A 		36.1
(3)
A 		9.1
(-2.6)
A 		29
C 42.5
(-0.4)
A 		73.9
(3)
P 		18.2
(-3)
A 		31.5
(-1.6)
A 		35.7
(-1.1)
A 		44.6
(-0.2)
A 		56
avr 41.3
(3) 		40.7
(2.8) 		36.3
(1.4) 		22.1
(-3) 		36.2
(1.4) 		31.4
(-0.1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 10.1
(0.8)
A 		11.8
(1.5)
A 		1.6
(-3)
A 		15.2
(3)
A 		14
B 18.5
(3)
A 		16.1
(1.8)
A 		6.6
(-3)
A 		10.8
(-0.9)
A 		12
C 14.2
(1.4)
A 		17.2
(3)
A 		6.1
(-3)
A 		16.8
(2.8)
P 		11
avr 14.3
(2.6) 		15
(3) 		4.8
(-3) 		14.3
(2.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 11.3
(0.1)
A 		7.6
(-2.6)
A 		15.4
(3)
A 		7
(-3)
A 		11.1
(-0.1)
A 		9.8
(-1)
A 		8
B 6.9
(-0.7)
A 		8.9
(0.3)
A 		4.9
(-1.6)
A 		1.9
(-3)
A 		14.7
(3)
A 		3.4
(-2.3)
A 		13
C 15.8
(0.7)
A 		22.6
(3)
P 		4.6
(-3)
A 		6.3
(-2.4)
A 		11.5
(-0.7)
A 		14.9
(0.4)
A 		18
avr 11.3
(1.7) 		13
(3) 		8.3
(-0.6) 		5.1
(-3) 		12.4
(2.5) 		9.4
(0.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191673_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12325
Sequence Type Exemplar sequence
Representative Public ID F07C4.13 NCBI
Target Description F07C4.13 /REP_DB=WormBase Gene ID /WP=CE24881 /GEN=srh-200 /TR=P91219 /GB=AAG24046.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072582(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072582 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-200) (srh-200) mRNA, complete cds. 11/11 None
F07C4.13 ENSEMBL cdna:known chromosome:CEL140:V:7654930:7656259:-1 gene:F07C4.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003399 4/11 Cross Hyb Matching Probes None
GENEFINDER00000003408 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7654930-7656260(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-200
Ensembl F07C4.13
Entrez Gene 184135 Entrez gene
SwissProt P91219 EMBL-EBI
WormBase CE24881 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504983 Serpentine Receptor, class H family member (srh-200) [Caenorhabditis elegans] gb|AAG24046.1| Serpentine receptor, class h protein 200 [Caenorhabditis elegans] 0.0
blast T28950 hypothetical protein F07C4.13 - Caenorhabditis elegans 0.0
blast AAG24117 Serpentine receptor, class h protein 193 [Caenorhabditis elegans] ref|NP_504183.2| Serpentine Receptor, class H family member (srh-193) [Caenorhabditis elegans] 6.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504983.1 7 20-42,55-77,97-119,140-162,200-222,243-265,278-300
F07C4.13 7 20-42,55-77,97-119,140-162,200-222,243-265,278-300
Sequence
Target Sequence 
>C. ELEGANS:191673_AT
gcgcccatggctggtggcaaatcacgtaatagttcttctttttgttatccctataggatt
tatggtccctgatcaacaactagcgagacagattacttttgagaaactaccatgtctgcc
cagtgaaatttataatgctcccgtgctagtattagcaattgactacacttatcatttcat
tgctgcagtaacttatatcacatttttcactttgcaagtcatattttttgcgggtttcct
ggcttggaatagtatatcacagttgatgaaaaatacaatgtcgaggagaacttttaacct
tcaaagaaaatttttcattactctacttattcagcttattgtaccattagtattcttttt
ctttccatcgttttatgttttggtatcagttattattaagtactataatcaagcaattct
caatatcttgtttgttggggcctcagttcaaggaatcgtttctacatgggtgatgctttt
ggtatatcgaccatatcgggagtcagtggtttctctgttctacaaaccgtttaaagcaac
tcaggaaaattctctgaaacagttgaatcctctacgtggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCCCATGGCTGGTGGCAAATCAC 534 287 429 Antisense
TATGGTCCCTGATCAACAACTAGCG 28 655 489 Antisense
TTGAGAAACTACCATGTCTGCCCAG 650 703 527 Antisense
ATAATGCTCCCGTGCTAGTATTAGC 290 25 560 Antisense
TACACTTATCATTTCATTGCTGCAG 306 643 592 Antisense
TTTTGCGGGTTTCCTGGCTTGGAAT 37 675 654 Antisense
TTCATTACTCTACTTATTCAGCTTA 212 689 742 Antisense
ATTAGTATTCTTTTTCTTTCCATCG 546 13 774 Antisense
ATATCTTGTTTGTTGGGGCCTCAGT 237 21 851 Antisense
GAGTCAGTGGTTTCTCTGTTCTACA 625 399 928 Antisense
GAAACAGTTGAATCCTCTACGTGGT 270 355 984 Antisense
Sequence Source Affymetrix Proprietary Database