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[191670_at] Sodium/phosphate transporter

Description T09B9.2 /REP_DB=WormBase Gene ID /WP=CE01650 /TR=Q10048 /GB=CAA87340.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Sodium-phosphate transporter
Cluster 6grp_total > 91      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 113.2
(-1.6)
A 		159.5
(-0)
A 		74
(-3)
A 		246.3
(3)
A 		172
B 69.9
(-3)
A 		152
(3)
A 		111.4
(0)
A 		115.8
(0.4)
A 		82
C 71.8
(-3)
A 		138.4
(-0.6)
A 		122.4
(-1.2)
A 		241.2
(3)
A 		169
avr 85
(-3) 		150
(0.4) 		102.6
(-2.1) 		201.1
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 146.5
(0.5)
A 		105.4
(-1.7)
A 		82.3
(-3)
A 		160.4
(1.2)
M 		192.9
(3)
P 		128.4
(-0.5)
A 		111
B 166.5
(2.5)
P 		109.2
(0.1)
A 		34
(-3)
A 		158.6
(2.2)
A 		177.5
(3)
P 		99.4
(-0.3)
A 		144
C 143.3
(1.9)
P 		101.1
(-0.9)
A 		68.4
(-3)
A 		137.2
(1.5)
A 		160.5
(3)
P 		71.7
(-2.8)
A 		92
avr 152.1
(1.7) 		105.2
(-0.7) 		61.6
(-3) 		152.1
(1.7) 		177
(3) 		99.8
(-1) 		115
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 41.2
(3)
A 		34.6
(1.2)
A 		19.3
(-3)
A 		36.1
(1.6)
A 		22
B 22.3
(-3)
A 		37.5
(3)
A 		25.8
(-1.6)
A 		24.7
(-2.1)
A 		15
C 23.8
(-3)
A 		39.8
(2.1)
A 		42.7
(3)
A 		40.7
(2.4)
A 		19
avr 29.1
(-3) 		37.3
(3) 		29.3
(-2.9) 		33.8
(0.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 27
(-1.6)
A 		37.5
(-0.1)
A 		17.9
(-3)
A 		40.7
(0.4)
M 		58.2
(3)
P 		31.3
(-1)
A 		40
B 57.9
(1.7)
P 		36.3
(-0.4)
A 		8.2
(-3)
A 		42
(0.2)
A 		72.1
(3)
P 		37.1
(-0.3)
A 		64
C 53.1
(3)
P 		30.8
(-0.7)
A 		17.4
(-3)
A 		27.6
(-1.3)
A 		51.9
(2.8)
P 		24
(-1.9)
A 		36
avr 46
(1.1) 		34.9
(-0.4) 		14.5
(-3) 		36.8
(-0.1) 		60.7
(3) 		30.8
(-0.9) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191670_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16185
Sequence Type Exemplar sequence
Representative Public ID T09B9.2 NCBI
Target Description T09B9.2 /REP_DB=WormBase Gene ID /WP=CE01650 /TR=Q10048 /GB=CAA87340.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Sodium-phosphate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077238(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077238 NCBI Caenorhabditis elegans T09B9.2 (T09B9.2) mRNA, complete cds. 11/11 None
SNAP00000010999 ENSEMBL cdna:SNAP chromosome:CEL140:X:9761768:9764850:-1 11/11 None
GENEFINDER00000011008 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9761768:9764850:-1 11/11 None
T09B9.2 ENSEMBL cdna:known chromosome:CEL140:X:9761420:9764853:-1 gene:T09B9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9761767-9764850(-) 100.0 100.0
Public Domain and Genome References
Gene Title Sodium/phosphate transporter
Ensembl T09B9.2
Entrez Gene 181189 Entrez gene
SwissProt Q10048 EMBL-EBI
WormBase CE01650 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
6817 phosphate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
15114 phosphate transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87340 Hypothetical protein T09B9.2 [Caenorhabditis elegans] ref|NP_509639.1| T09B9.2 [Caenorhabditis elegans] 0.0
blast CAE69738 Hypothetical protein CBG16009 [Caenorhabditis briggsae] 0.0
blast AAK29824 Hypothetical protein F45E4.11 [Caenorhabditis elegans] ref|NP_501248.1| F45E4.11 [Caenorhabditis elegans] 1.0E-113
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509639.1 9 20-42,120-142,207-229,275-297,317-339,351-370,375-397,404-426,445-467
T09B9.2 9 20-42,120-142,207-229,275-297,317-339,351-370,375-397,404-426,445-467
SNAP00000010999 9 20-42,120-142,203-225,259-281,301-323,335-354,359-381,388-410,429-451
GENEFINDER00000011008 9 20-42,120-142,207-229,275-297,317-339,351-370,375-397,404-426,445-467
Sequence
Target Sequence 
>C. ELEGANS:191670_AT
gtatcagcacttccaatggctattctgtttttgtcaaaatgtctctcggcaagcctagcg
tcatatcttactgcaaacggatatttgagaaaaacccagtcttgcaaaatattcaacttc
atcgcctcactcggacttggtatttgcattgctgcaactccgctaatgagtaatctacaa
catgcaatatgggcaattataattctctgcttggcaaatgcatttgcaggacttcataca
cctggtgtcctaactgcaattgtccaacttgctccagcattctctggaattatcactgga
ctcgcatttgctgttgcatcttgcttctccatcttcaataaactattgatcagtcagatt
ttgaggaccggttctaaacatgaatggactattgttttcgagatttcagcgtttgtcgca
atcttaccaactatctttttcacactctggggatcagctgagagaactgaatgggcgtcc
aaccgagtatcagttccgaaagatgctgatcaaaagtctaatgactccggctcctcaaca
tcctctacaattcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCAGCACTTCCAATGGCTATTC 18 455 955 Antisense
GCCTAGCGTCATATCTTACTGCAAA 88 281 1007 Antisense
TTGCATTGCTGCAACTCCGCTAATG 506 701 1098 Antisense
TACACCTGGTGTCCTAACTGCAATT 611 641 1191 Antisense
TTATCACTGGACTCGCATTTGCTGT 51 681 1244 Antisense
GCATTTGCTGTTGCATCTTGCTTCT 153 309 1258 Antisense
AGCGTTTGTCGCAATCTTACCAACT 55 81 1362 Antisense
TTACCAACTATCTTTTTCACACTCT 275 681 1378 Antisense
GAATGGGCGTCCAACCGAGTATCAG 47 333 1423 Antisense
AAAAGTCTAATGACTCCGGCTCCTC 98 133 1466 Antisense
TCCTCAACATCCTCTACAATTCAAG 188 591 1486 Antisense
Sequence Source Affymetrix Proprietary Database