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[191669_at] TSC-22 / dip / bun family

Description T18D3.7 /REP_DB=WormBase Gene ID /WP=CE03668 /TR=SW:Q22544 /GB=CAA92196.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=TSC-22 - dip - bun family
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 23      4grp_highest_8_8 > 52      4grp_high_8_8 > 24      6grp_highest_nonorm > 71      6grp_total > 03      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 504.2
(3)
P 		285.7
(-2.3)
P 		257.6
(-3)
P 		282.3
(-2.4)
P 		247
B 563
(3)
P 		244.4
(-3)
P 		271.3
(-2.5)
P 		370.5
(-0.6)
P 		319
C 443.4
(3)
P 		235.3
(-3)
P 		288.1
(-1.5)
P 		341.7
(0.1)
P 		208
avr 503.5
(3) 		255.1
(-3) 		272.3
(-2.6) 		331.5
(-1.2) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 344.9
(1.2)
P 		371.2
(2.5)
P 		383
(3)
P 		380.1
(2.9)
P 		362.3
(2)
P 		252.7
(-3)
P 		130
B 389.9
(1.8)
P 		418
(2.9)
P 		344.7
(0)
P 		421.2
(3)
P 		417.9
(2.9)
P 		267.3
(-3)
P 		154
C 444.2
(3)
P 		421.3
(2)
P 		323.2
(-2.2)
P 		342.2
(-1.4)
P 		345.8
(-1.3)
P 		305.5
(-3)
P 		139
avr 393
(2.5) 		403.5
(3) 		350.3
(0.5) 		381.2
(2) 		375.3
(1.7) 		275.2
(-3) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 183.6
(3)
P 		62
(-2.1)
P 		67.3
(-1.9)
P 		41.3
(-3)
P 		142
B 179.5
(3)
P 		60.4
(-3)
P 		62.9
(-2.9)
P 		79
(-2.1)
P 		119
C 146.8
(3)
P 		67.7
(-2.3)
P 		100.4
(-0.1)
P 		57.6
(-3)
P 		89
avr 170
(3) 		63.4
(-2.8) 		76.9
(-2) 		59.3
(-3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 63.6
(-2.8)
P 		132
(3)
P 		83.4
(-1.1)
P 		96.4
(-0)
P 		109.3
(1.1)
P 		61.5
(-3)
P 		71
B 135.7
(0.6)
P 		139.1
(0.9)
P 		83.7
(-3)
P 		111.6
(-1.1)
P 		169.8
(3)
P 		99.7
(-1.9)
P 		86
C 164.7
(3)
P 		128.6
(0.7)
P 		82.3
(-2.2)
P 		68.8
(-3)
P 		111.9
(-0.3)
P 		102.3
(-0.9)
P 		96
avr 121.3
(1.6) 		133.2
(3) 		83.1
(-3) 		92.3
(-1.9) 		130.3
(2.7) 		87.8
(-2.4) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191669_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16113
Sequence Type Exemplar sequence
Representative Public ID T18D3.7 NCBI
Target Description T18D3.7 /REP_DB=WormBase Gene ID /WP=CE03668 /TR=SW:Q22544 /GB=CAA92196.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=TSC-22 - dip - bun family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077685 NCBI Caenorhabditis elegans T18D3.7 (T18D3.7) mRNA, complete cds. 11/11 None
GENEFINDER00000005396 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12439958:12443161:1 11/11 None
SNAP00000005382 ENSEMBL cdna:SNAP chromosome:CEL140:X:12440682:12443161:1 11/11 None
T18D3.7.2 ENSEMBL cdna:known chromosome:CEL140:X:12442784:12443172:1 gene:T18D3.7 11/11 None
T18D3.7.1 ENSEMBL cdna:known chromosome:CEL140:X:12442784:12443818:1 gene:T18D3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12442783-12443161(+) 100.0 100.0
Public Domain and Genome References
Gene Title TSC-22 / dip / bun family
Ensembl T18D3.7
Entrez Gene 188577 Entrez gene
SwissProt Q22544 EMBL-EBI
WormBase CE03668 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92196 Hypothetical protein T18D3.7 [Caenorhabditis elegans] ref|NP_510086.1| T18D3.7 [Caenorhabditis elegans] sp|Q22544|YAE7_CAEEL Hypothetical protein T18D3.7 in chromosome X 4.0E-37
blast CAA92196 Hypothetical protein T18D3.7 [Caenorhabditis elegans] ref|NP_510086.1| T18D3.7 [Caenorhabditis elegans] sp|Q22544|YAE7_CAEEL Hypothetical protein T18D3.7 in chromosome X 5.0E-37
blast CAA92196 Hypothetical protein T18D3.7 [Caenorhabditis elegans] ref|NP_510086.1| T18D3.7 [Caenorhabditis elegans] sp|Q22544|YAE7_CAEEL Hypothetical protein T18D3.7 in chromosome X 8.0E-37
blast CAE57249 Hypothetical protein CBG00127 [Caenorhabditis briggsae] 6.0E-35
blast CAE57249 Hypothetical protein CBG00127 [Caenorhabditis briggsae] 2.0E-28
blast CAE57249 Hypothetical protein CBG00127 [Caenorhabditis briggsae] 3.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR000580 EMBL-EBI TSC-22 / Dip / Bun 3.3E-45
Pfam IPR000580 EMBL-EBI TSC-22 / Dip / Bun 3.3E-45
Pfam IPR000580 EMBL-EBI TSC-22 / Dip / Bun 3.3E-45
Sequence
Target Sequence 
>C. ELEGANS:191669_AT
ctctccatcatcagttgctttgttgagtggagacccaacaaaaatggaagattctgcaaa
attggcgaccgccaccagtaacacagttgttgcaatcgataataaaattgtacaggctat
ggatttggtaaaaacacatctcacgtttgcggtacgggaggaggtcgagactttgcggac
gacaataaccgatttggaagctaggctcaatgcactgcgagaggaaaaccgtttacttcg
tgaaaacgtgtctccagaagtgttggctttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCCATCATCAGTTGCTTTGTTG 577 231 21 Antisense
GATTCTGCAAAATTGGCGACCGCCA 70 433 70 Antisense
CCGCCACCAGTAACACAGTTGTTGC 15 261 89 Antisense
ACACATCTCACGTTTGCGGTACGGG 83 107 154 Antisense
GGTACGGGAGGAGGTCGAGACTTTG 685 503 171 Antisense
CGAGACTTTGCGGACGACAATAACC 309 241 186 Antisense
ATAACCGATTTGGAAGCTAGGCTCA 195 25 205 Antisense
GGAAGCTAGGCTCAATGCACTGCGA 308 531 216 Antisense
AATGCACTGCGAGAGGAAAACCGTT 125 165 229 Antisense
TTACTTCGTGAAAACGTGTCTCCAG 677 669 253 Antisense
CGTGTCTCCAGAAGTGTTGGCTTTC 24 243 267 Antisense
Sequence Source Affymetrix Proprietary Database