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[191667_at] Zinc-binding dehydrogenases

Description Y48A6B.9 /REP_DB=WormBase Gene ID /WP=CE19192 /TR=Q9XXC8 /GB=CAA19533.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc-binding dehydrogenases
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 92      6grp_total > 77      4grp_total > 08      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 921
1 2 3 4 range
A 200.1
(-3)
P 		212.7
(-2.9)
P 		328.3
(-2.1)
P 		1086.4
(3)
P 		886
B 166.7
(-3)
P 		197.8
(-2.8)
P 		366.4
(-1.5)
P 		986.3
(3)
P 		820
C 182.5
(-2.9)
P 		165.6
(-3)
P 		383.3
(-1.3)
P 		932.2
(3)
P 		767
avr 183.1
(-3) 		192
(-2.9) 		359.3
(-1.7) 		1001.6
(3) 		819

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 408
1 2 3 4 5 6 range
A 202.5
(-2.7)
P 		189.3
(-3)
P 		200.8
(-2.7)
P 		274.6
(-1.1)
P 		308.9
(-0.4)
P 		460.1
(3)
P 		271
B 203.4
(-2.9)
P 		197.2
(-3)
P 		264.6
(-1.7)
P 		229.5
(-2.4)
P 		237
(-2.2)
P 		508.9
(3)
P 		312
C 194.9
(-3)
P 		218.4
(-2.6)
P 		242.6
(-2.3)
P 		239.5
(-2.3)
P 		221.4
(-2.6)
P 		597.4
(3)
P 		403
avr 200.3
(-3) 		201.6
(-3) 		236
(-2.3) 		247.9
(-2.1) 		255.8
(-2) 		522.1
(3) 		322
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 72.9
(-1.6)
P 		46.2
(-3)
P 		85.8
(-0.9)
P 		159
(3)
P 		113
B 53.2
(-2.8)
P 		48.9
(-3)
P 		84.9
(-1.7)
P 		210.2
(3)
P 		161
C 60.4
(-2.3)
P 		47.6
(-3)
P 		133.6
(1.7)
P 		157.2
(3)
P 		110
avr 62.2
(-2.3) 		47.6
(-3) 		101.4
(-0.5) 		175.5
(3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 37.3
(-3)
P 		67.3
(-0.6)
P 		43.7
(-2.5)
P 		69.6
(-0.4)
P 		93.2
(1.5)
P 		112
(3)
P 		75
B 70.8
(-2.5)
P 		65.6
(-2.8)
P 		64.2
(-2.8)
P 		60.8
(-3)
P 		96.3
(-1.3)
P 		189.8
(3)
P 		129
C 72.2
(-2.1)
P 		66.6
(-2.3)
P 		61.7
(-2.5)
P 		48.2
(-3)
P 		71.6
(-2.1)
P 		200
(3)
P 		152
avr 60.1
(-2.8) 		66.5
(-2.5) 		56.5
(-3) 		59.5
(-2.8) 		87
(-1.3) 		167.3
(3) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191667_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7934
Sequence Type Exemplar sequence
Representative Public ID Y48A6B.9 NCBI
Target Description Y48A6B.9 /REP_DB=WormBase Gene ID /WP=CE19192 /TR=Q9XXC8 /GB=CAA19533.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Zinc-binding dehydrogenases
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067019(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067019 NCBI Caenorhabditis elegans Y48A6B.9 (Y48A6B.9) mRNA, complete cds. 11/11 None
GENEFINDER00000033027 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11031531:11035806:1 11/11 None
SNAP00000033013 ENSEMBL cdna:SNAP chromosome:CEL140:III:11033103:11035806:1 11/11 None
Y48A6B.9.2 ENSEMBL cdna:known chromosome:CEL140:III:11033006:11035948:1 gene:Y48A6B.9 11/11 None
Y48A6B.9.1 ENSEMBL cdna:known chromosome:CEL140:III:11033050:11035948:1 gene:Y48A6B.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11033098-11035802(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc-binding dehydrogenases
Ensembl Y48A6B.9
Entrez Gene 176534 Entrez gene
SwissProt Q9XXC8 EMBL-EBI
WormBase CE19192 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4024 alcohol dehydrogenase activity, zinc-dependent inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19533 Hypothetical protein Y48A6B.9 [Caenorhabditis elegans] ref|NP_499420.1| Y48A6B.9 [Caenorhabditis elegans] sp|Q9XXC8|MECR2_CAEEL Probable trans-2-enoyl-CoA reductase 2, mitochondrial precursor 0.0
blast CAA19533 Hypothetical protein Y48A6B.9 [Caenorhabditis elegans] ref|NP_499420.1| Y48A6B.9 [Caenorhabditis elegans] sp|Q9XXC8|MECR2_CAEEL Probable trans-2-enoyl-CoA reductase 2, mitochondrial precursor 1.0E-163
blast CAE71326 Hypothetical protein CBG18225 [Caenorhabditis briggsae] 1.0E-161
blast CAE71326 Hypothetical protein CBG18225 [Caenorhabditis briggsae] 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 5.7E-13
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 1.6E-13
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 2.9E-40
Sequence
Target Sequence 
>C. ELEGANS:191667_AT
aaattctgcaaattccggtgtcggtagaagtgttatcgaaatgtgcaaagcattaggcta
taaaagtattaatatcgtcagaaatcggcagaatattgaagctttgaagacagatttatg
gaggattggagcagatcacgtgtttactgaagaagagttcaagggcacttctaggcagtt
tctgaaatcaatcaatgttcgtccaaaacttgccctaaacggagtcggcgggaaaagtgc
tctacaaattagctctgtgctcgagagaggtggcacgtgtgtcacgtatggtggaatgtc
gaaaaaagcacacgaattcacaacttctgcactggttttcaatgatatttgtgtgagagg
tgttgcagttggaatgtgggctcggcaggaagagcatttagatgaatggaatctctgtgt
tgatgaggttcagaaactcgcggttgctggaaaaatcacggcgattcctatggaaaaagt
ggtgttggcagatcacaagactgcgattcaaaaatctttggaaggccggagcatcaaaca
gctcttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTCTGCAAATTCCGGTGTCGGT 232 115 471 Antisense
GATTGGAGCAGATCACGTGTTTACT 587 435 594 Antisense
CAAGGGCACTTCTAGGCAGTTTCTG 196 181 630 Antisense
CAATGTTCGTCCAAAACTTGCCCTA 579 181 663 Antisense
GGAGTCGGCGGGAAAAGTGCTCTAC 78 517 691 Antisense
GTGCTCTACAAATTAGCTCTGTGCT 13 481 707 Antisense
GAGAGAGGTGGCACGTGTGTCACGT 29 395 733 Antisense
GAATTCACAACTTCTGCACTGGTTT 327 325 784 Antisense
GTTGCAGTTGGAATGTGGGCTCGGC 655 437 832 Antisense
GGTTCAGAAACTCGCGGTTGCTGGA 200 507 897 Antisense
GGCCGGAGCATCAAACAGCTCTTCG 222 535 994 Antisense
Sequence Source Affymetrix Proprietary Database